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Name : kdsD (PFL_0920) Accession : YP_258051.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : arabinose 5-phosphate isomerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : 5.3.1.13 Position : 1062915 - 1063889 bp Length : 975 bp Strand : - Note : identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 DNA sequence : ATGAGCCAATCCAGCGACCTGATTCAATCAGCACAACGCACCATCCGCCTCGAACTACAGGCAGTAGAAGGCTTGCTGCC CCATATCGACGCAGATTTCGTACGCGCTTGCGAGATGATTCTGGCCAGCAAAGGCCGCGTAGTGGTGGTCGGCATGGGCA AGTCCGGGCACGTCGGCAACAAGATTGCCGCCACCCTGGCCAGCACCGGGACCACGGCCTTCTTCGTCCATCCTGCCGAA GCCAGCCATGGCGACATGGGCATGATTACCCGCGATGACGTGATCCTGGCCCTCTCCAACTCCGGCTCCACCAACGAAAT CGTCACCCTGCTGCCCCTGATCAAGCGTCTGGGCATCCAGTTGATCAGCCTCACCGGCAACCCCGAGTCGCCGCTGGCCA AGGCGGCTGACGTCAACCTCAACGTCCACGTCGAGCACGAAGCCTGCCCGCTGAACCTGGCACCGACCTCCTCGACCACC GCCGCCCTGGTCATGGGCGACGCCCTGGCCGTGGCGCTGCTGGAAGCCCGGGGCTTCACTGCCGAGGACTTTGCCTTCTC CCACCCGGGTGGTGCCCTGGGCCGTCGCCTGCTGCTCAAGGTGGAGAACGTCATGCACGAAGGCAGCGATCTGCCCCAGG TGCAACGCGGCACCCTGCTCAAGGACGCGCTCATGGAAATGACCCGCAAGGGCCTGGGCATGACCGTGATCCTGGAGGCC GACGGCCGCCTGGCCGGGATCTTCACCGACGGCGACCTGCGTCGCACCCTGGATCGGGCCATCGATATACACCATGCCAC CATCGATTCGGTGATGACCCCTCATGGCAAGACCGCACGTGCCGACATGCTGGCCGCCGAAGCCCTAAAAATCATGGAAG ACCACAAGATCAGCGCCCTGGTGGTGGTGGACAAGGAAGACCGGCCGATCGGCGCCTTGAACATGCACGACCTGCTGCGC GCGGGAGTGATGTGA Protein sequence : MSQSSDLIQSAQRTIRLELQAVEGLLPHIDADFVRACEMILASKGRVVVVGMGKSGHVGNKIAATLASTGTTAFFVHPAE ASHGDMGMITRDDVILALSNSGSTNEIVTLLPLIKRLGIQLISLTGNPESPLAKAADVNLNVHVEHEACPLNLAPTSSTT AALVMGDALAVALLEARGFTAEDFAFSHPGGALGRRLLLKVENVMHEGSDLPQVQRGTLLKDALMEMTRKGLGMTVILEA DGRLAGIFTDGDLRRTLDRAIDIHHATIDSVMTPHGKTARADMLAAEALKIMEDHKISALVVVDKEDRPIGALNMHDLLR AGVM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 1e-57 | 45 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 7e-58 | 45 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 2e-57 | 45 |
