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Name : clpV (PFL_6093) Accession : YP_263151.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : type VI secretion ATPase ClpV Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 6920216 - 6922891 bp Length : 2676 bp Strand : + Note : See Hsu et. al. 2009 (PMID: 19400797) for more information.; identified by similarity to SP:Q9I742; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match t DNA sequence : ATGGGTGAAATCAGTCGCGCGGCGCTGTTCGGCAAACTCAACAGCGTTGCCTACAAAGCCATCGAAGCCGCCACGGTCTT CTGCAAATTGCGGGGCAACCCCTATGTGGAACTGGCCCACTGGTTTCACCAGTTGCTGCAACTTACGGACTCGGACCTGC ACCGCATCATCCGCCAGTTCAACCTGGAGCCGGCGCGCCTGGCCAAGGACCTGACCGAGGCCCTGGACCGCCTGCCCCGG GGCTCGACCTCGATCACCGACCTGTCGTCCCACGTCGAGGAGGCGGTGGAGCGCGGTTGGGTCTACGGCAGCCTGATGTT CGGCGAAAGCCAGGTGCGCACCGGCTACCTGGTGATCGGCATCCTCAAGACCCCGAGCCTGCGCCATGCGTTGCTGGGGC TGTCCCGCGAGTTCGACAAGATCAAGGTCGAGACCCTGTGCGAGCGCTTTGACGAATACATCGGCGACTCGCCGGAAAAC GCCCTGAGCGCCAGCGACGGCTTCAGTGCCGGTGCGGTGCCCGGCGAAGCCAGCGGCGCCATGGCCCCCAGCGCCCTGGG CAAGCAGGAAGCCCTCAAGCGCTTCACCGTCGACCTCACCGAACAGGCCCGCAGCGGCAAGCTCGACCCCATCGTCGGCC GTGACGAAGAGATCCGCCAACTGGTGGACATCCTCATGCGCCGCCGGCAGAACAACCCGATCCTCACCGGTGAAGCCGGG GTGGGCAAGACCGCGGTGGTGGAAGGTTTCGCCCTGCGCATCGTCGCCGGCGACGTGCCGCCGGCGCTCAAGGACGTTGA ACTGCGCAGCCTCGACGTCGGCCTGCTGCAGGCCGGCGCCAGCATGAAGGGCGAGTTCGAACAGCGCCTGCGCCAGGTCA TCGAGGACGTCCAGGCCTCGCCCAAGCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGGTGGGCGCCGGTGGCGCC GCCGGCACCGGCGACGCGGCCAACCTGCTCAAGCCGGCTCTGGCCCGTGGTACCCTGCGCACCGTGGCCGCCACCACCTG GGCCGAGTACAAGAAGCACATCGAGAAAGACCCGGCCCTGACCCGGCGCTTCCAGGTGGTGCAAGTAGCCGAACCTTCGG AAGACAAGGCGCTGCTGATGATGCGCGGCGTGGCCTCGACCATGGAACAGCACCATCAGGTGCAGATCCTCGACGAAGCC CTGGAGGCCTCGGTCAAACTGTCCCATCGCTACATTCCCGCGCGCCAGTTGCCGGACAAATCCGTCAGCCTGCTGGATAC CGCTTGCGCCCGCGTCGCCATCAGCCTGCACGCCGTGCCGGCCGAGGTGGACGATAGCCGCCGGCGCATCGAGGCCCTGG AAACCGAGCTGCAGATCATCGCCCGGGAACAGGCGATCGGCGTTGCCATTGGCAACCGCCAGGTCAACAGCGAGAACCTC CTGACTGCCGAGCGCGAGCGCCTGGCCGAGCTGGAAAGTCGCTGGGCACAAGAGAAGACCCTGGTGGACGAACTGCTGGC AACCCGCGCCCAATTGCGGGAAAACGTCGGCTTGGTGGACAGCGACGTCGGCGACGACAGCCACGGCCTGCGGGAAAAAC TGGTGGACCTGCAACAGCGCCTCAGCACTCTGCAAGGCGAGACCCCGCTGATCCTGCCGACCGTGGACTACCAGGCCGTG GCCTCGGTGGTCGCCGACTGGACCGGCATTCCAGTGGGGCGCATGGCCCGCAACGAGCTGGAAACCGTGCTCAACCTGGA CCAGCACCTGAAGAAACGCATCATCGGCCAGGACCACGCCCTGCAGATGATCGCCAAGCGCATCCAGACCTCCCGCGCCG GCCTCGACAACCCCAACAAGCCGATCGGCGTGTTCATGCTGGCCGGCACTTCCGGGGTGGGCAAGACCGAAACCGCCCTG GCCCTGGCCGAAGCCATGTATGGCGGAGAGCAGAACGTCATCACCATCAACATGAGCGAGTTCCAGGAAGCCCACACCGT GTCCACCCTCAAGGGCGCCCCGCCGGGCTATGTCGGCTACGGCGAAGGTGGCGTGCTCACCGAAGCGGTACGGCGCAAGC CCTACAGCGTGGTGCTGCTGGACGAAGTGGAAAAGGCCCACCCGGACGTGCACGAGATCTTCTTCCAGGTATTCGACAAG GGCGTCATGGAAGACGGCGAAGGCCGCATGATCGACTTCAAGAACACCCTGATCCTGCTTACCACCAACGCCGGCACCGA GCTGATCGCCAACGTCTGCAAGAACCCGCAGGCGGTGCCCGAGCCGGAGGAAATCGCCAAGGCCCTGCGCCAGCCACTGC TGGAGATCTTCCCGCCGGCACTGCTGGGGCGCCTGGTGACCATTCCCTACTACCCGCTGAGCGACGAGATGCTCAAGGCC ATCACCCGCCTGCAACTGGGGCGGATCAAGAAGCGCGTGGAAAGCACCCACAAGGTGGATTTCGATTTCGACGACGAGGT CATCGACCTGATCGTCTCGCGCTGCACCGAGACCGAAAGCGGCGGGCGGATGATCGACGCCATCCTGACCAACAGCCTGC TGCCGGACATGAGCCGCGAGTTCCTCAACCGCATGCTCGAAGGCCGCGCCCTGGCCGGGGTGCGCATCAGCCAGCGCGAC AACGAACTGCACTACGACTTCAGCGAGCCGGCCTGA Protein sequence : MGEISRAALFGKLNSVAYKAIEAATVFCKLRGNPYVELAHWFHQLLQLTDSDLHRIIRQFNLEPARLAKDLTEALDRLPR GSTSITDLSSHVEEAVERGWVYGSLMFGESQVRTGYLVIGILKTPSLRHALLGLSREFDKIKVETLCERFDEYIGDSPEN ALSASDGFSAGAVPGEASGAMAPSALGKQEALKRFTVDLTEQARSGKLDPIVGRDEEIRQLVDILMRRRQNNPILTGEAG VGKTAVVEGFALRIVAGDVPPALKDVELRSLDVGLLQAGASMKGEFEQRLRQVIEDVQASPKPIILFIDEAHTLVGAGGA AGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVAEPSEDKALLMMRGVASTMEQHHQVQILDEA LEASVKLSHRYIPARQLPDKSVSLLDTACARVAISLHAVPAEVDDSRRRIEALETELQIIAREQAIGVAIGNRQVNSENL LTAERERLAELESRWAQEKTLVDELLATRAQLRENVGLVDSDVGDDSHGLREKLVDLQQRLSTLQGETPLILPTVDYQAV ASVVADWTGIPVGRMARNELETVLNLDQHLKKRIIGQDHALQMIAKRIQTSRAGLDNPNKPIGVFMLAGTSGVGKTETAL ALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDK GVMEDGEGRMIDFKNTLILLTTNAGTELIANVCKNPQAVPEPEEIAKALRQPLLEIFPPALLGRLVTIPYYPLSDEMLKA ITRLQLGRIKKRVESTHKVDFDFDDEVIDLIVSRCTETESGGRMIDAILTNSLLPDMSREFLNRMLEGRALAGVRISQRD NELHYDFSEPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 0.0 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpV | YP_263151.1 | type VI secretion ATPase ClpV | VFG2076 | Protein | 0.0 | 87 |
| clpV | YP_263151.1 | type VI secretion ATPase ClpV | VFG2084 | Protein | 8e-148 | 44 |
