|
Name : tssF (PFL_6091) Accession : YP_263149.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : type VI secretion protein TssF Function : - COG functional category : S : Function unknown COG ID : COG3519 EC number : - Position : 6917348 - 6919207 bp Length : 1860 bp Strand : + Note : See Hsu et. al. 2009 (PMID: 19400797) for more information.; identified by similarity to GB:AAG03478.1; match to protein family HMM PF05947; match to protein family HMM TIGR03359 DNA sequence : ATGAACCCGCGCCTGCTGGAGCTGTACAACCAGGAACTGCACCACGTGCGCGAAAGCGCCGCGGAGTTCGCCAAGGAATT CCCGAAGATCGCCAGCCGCCTGACCCTGTCGGGCATGGACTGCGCCGACCCCTATGTCGAGCGCCTGCTGGAGGGCTTCG CCTACCTGACTGCCCGGGTGCAGCTCAAGCTCGACGCCGAGTACCCGACCTTCACCCACAACCTGCTGGAGATCGCCTAC CCGCACTACCTGGCACCGACCCCATCGATGACCGTGGTGCAGTTGCAGGCCGATCCCGACGAAGGTTCCCTGAGCAGCGG CTTCACCCTGGAGCGCGACACCAGCCTGCGCGCCGCCCTGGGCCGCGATACCCAGACCTGCTGCGAATACCGCACCGCGC ACTCGGTGACCCTGTGGCCACTGCAAGTGGCCCAGGCCGAATACTTCGGCAACCCGTCGGCAGTGCTCGGGCGCCTGGCC GCCAGCGAACCCAGGGCCAAGGCCGGGCTGCGCCTGACCCTGCGCACCGGCGCCGAACTGCCGTTCAACAGCCTGGCCCT GGACGAGTTGCCGCTGTACCTGAACGGCAATGACGAACAGCCGTTCCGCCTCTACGAACAACTGCTGGGCAACGTCTGCG CGGTGTTCGCCCGGGCCCCGGGCGGCGACTGGGTCGAGCGCCTGCCCCCGGACGCCCTGCGCTCGCGCGGTTTCGACGAC CGCGACGCGGCGCTGCCGGTGGTGCCCCAGGCCTTCCAGGGCTACCGCCTGCTGCAGGAATACTTCGCCCTGCCCAACCG CTTCCTGTTCGTCGAATTCGCCCAGCTGGGGCGCGCGGTCCAGCGCTGCGCCGGCCAGGAGCTGGAGCTGATCGTGCTCT TCGAGCGCTTCGACCAGAGCCTGGAAGGCAGCGTCGGCACCGCTCAGTTCGTGCCCTTCTGCACCCCGGCGATCAACCTG TTTCCCAAGCGCCTGGACCGTATCCACCTGTCCGACCGGGTCAACGAGCACCATGTGATCGCCGACCGCACCCGCCCGAT GGATTTCGAGGTCCACTCGCTGACCGCTATCAGCGGCCACGGCACCGGCCCGGAACAGCCGTTCCTGCCGTTCTACGCCG TGCGCGATCCATCCCGCTACGGCCGCGACCAGTCCTACTACATCGTCCGGCGCGAGCCGCGGGTGCTGTCCAGCGACCAG CGTCGCAACGGCCCGCGCTCCACCTACATCGGCAGCGAATCCTTCGTCAGCCTGGTGGACAGCCAGCAGGCGCCCTATCG CCACGACCTGCGCCAGCTCGGGGTCAGCGCGCTGTGCACCAACCGCGACCTGCCACTGTTCATGAACACCGGCAACGGCA AGACCGACTTCACCCTGGCCGACAGCGCCCCGGTACAGGCCATCCGCTGCCTGGCGGGCCCGAGCCGGCCGCGCCCCAGC CATGCCCACGACGGCAAGGCCTGGCGCCTGATCAGCCAGCTGTCGCTGAACTACCTGTCCCTGAGCGAACAGGGCCAGGG CGCGGCGGCCCTGCGCGAACTGCTGCGGTTGTACGGCGACAGCAACGACGCGGCCCTGCAGTTGCAGATCGAGGGCCTGC GGGAAGTCAGCAGCAAGGCGGTGACCCGGCGCCTGCCGATGCCCGGGCCGATCGTCTTCGGCCGGGGCCTGGAGATCACC CTGGAGTTCGATGAAAACGCGTTCCGCGGCACCGGGGTGTTTCTGCTCGGCGCGGTATTCGAGCGCTTCCTGGCACGTTA TGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCGATGGAAAGCCAAGCCCG GACGTCGTCCGACTCTTTGA Protein sequence : MNPRLLELYNQELHHVRESAAEFAKEFPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAY PHYLAPTPSMTVVQLQADPDEGSLSSGFTLERDTSLRAALGRDTQTCCEYRTAHSVTLWPLQVAQAEYFGNPSAVLGRLA ASEPRAKAGLRLTLRTGAELPFNSLALDELPLYLNGNDEQPFRLYEQLLGNVCAVFARAPGGDWVERLPPDALRSRGFDD RDAALPVVPQAFQGYRLLQEYFALPNRFLFVEFAQLGRAVQRCAGQELELIVLFERFDQSLEGSVGTAQFVPFCTPAINL FPKRLDRIHLSDRVNEHHVIADRTRPMDFEVHSLTAISGHGTGPEQPFLPFYAVRDPSRYGRDQSYYIVRREPRVLSSDQ RRNGPRSTYIGSESFVSLVDSQQAPYRHDLRQLGVSALCTNRDLPLFMNTGNGKTDFTLADSAPVQAIRCLAGPSRPRPS HAHDGKAWRLISQLSLNYLSLSEQGQGAAALRELLRLYGDSNDAALQLQIEGLREVSSKAVTRRLPMPGPIVFGRGLEIT LEFDENAFRGTGVFLLGAVFERFLARYVSINSFTETVIRTTERGEIMRWKAKPGRRPTL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0289 | NP_454871.1 | hypothetical protein | Not tested | SPI-6 | Protein | 5e-116 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tssF | YP_263149.1 | type VI secretion protein TssF | VFG2074 | Protein | 0.0 | 82 |
