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Name : tssC (PFL_6088) Accession : YP_263146.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : type VI secretion protein TssC Function : - COG functional category : S : Function unknown COG ID : COG3517 EC number : - Position : 6914575 - 6916068 bp Length : 1494 bp Strand : + Note : See Hsu et. al. 2009 (PMID: 19400797) for more information.; identified by similarity to GB:AAG03474.1; match to protein family HMM PF05943; match to protein family HMM TIGR03355 DNA sequence : ATGACCGAATTGATGCGTGACAATCAGGCGCAACCCGGCGCCACCGAGCAGGCCAGCGAATTCGCATCGCTGCTGCTGCA GGAATTCAAGCCCAAGACCGAGCGTGCTCGCGAAGCCGTGGAAACCGCGGTGCGGACCCTGGCCGAACAGGCCCTGGCGC AGACCGACCTGGTGTCCAACGACGCCATCAAGTCGATCGAGTCGATCATCGCCGCCATCGACGCCAAGCTCACCGCCCAG GTCAACCAGGTGATCCATCACCCGGAATTCCAGAAGCTGGAAAGCGCCTGGCGCGGCCTGCACTACCTGGTGAACAACAC CGAGACCGACGAGCAGCTCAAGATCCGCGTGCTCAACATCTCCAAGCCGGAGCTGCACAAGACCCTGAAGAAATTCAAGG GCACGGCCTGGGACCAGAGCCCGCTCTTCAAGAAGATGTACGAAGAGGAATACGGCCAGTTCGGCGGCGAGCCCTACGGC TGCCTGGTGGGCGACTACTACTTCGACCAGTCGCCACCGGATGTCGAGCTGCTGGGCGAGCTGTCCAAGGTTTGCGCCGC CATGCACTCGCCGTTCATCGCCGCGGCTTCGCCGACCGTGATGGGCATGGGCTCGTGGCAGGAACTGTCGAACCCGCGCG ACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGCTCGCTGCGTGAATCGGAAGACTCGCGCTACATCGGC CTGACCATGCCGCGCTTCCTGGCGCGCCTGCCATACGGTGCCAAGACCGACCCGGTGGAAGCCTTCGCCTTCGAGGAAAA CACCGACGGCGCCGACAGCTCCAAGTACACCTGGGCCAACGCCGCCTACGCCATGGCCGTGAACATCAACCGTTCGTTCA AGCATTTCGGCTGGTGCTCGCGGATCCGCGGCGTGGAGTCCGGTGGCGAGGTGGAAAACCTCCCGGCCCACACCTTCCCC ACCGACGACGGTGGCGTGGACATGAAGTGCCCGACCGAGATCGCCATCTCCGACCGTCGTGAAGCGGAACTGGCGAAGAA CGGCTTCATGCCACTGCTGCACAAGAAGAACACCGACTTCGCCGCCTTCATCGGCGCCCAGTCGCTGCAGAAGCCGGCCG AATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCGCGCCTGCCGTACCTGTTCGCCACTTGCCGCTTCGCT CACTACTTGAAGTGCATCGTGCGCGACAAGATCGGCTCCTTCAAAGAGAAGGACGAGATGCAGCGCTGGCTGCAGGACTG GATCCTCAACTACGTCGACGGTGACCCGGCGCACTCCACCGAAACCACCAAGGCCCAGCACCCACTGGCCGCGGCAGAGG TGGTGGTCGAGGAAGTCGAAGGCAACCCCGGCTACTACAACTCGAAGTTCTTCCTGCGCCCGCACTACCAGCTCGAAGGG CTGACCGTGTCGTTGCGCCTGGTATCCAAACTGCCGTCCGCCAAGGGCGCCTAA Protein sequence : MTELMRDNQAQPGATEQASEFASLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKLTAQ VNQVIHHPEFQKLESAWRGLHYLVNNTETDEQLKIRVLNISKPELHKTLKKFKGTAWDQSPLFKKMYEEEYGQFGGEPYG CLVGDYYFDQSPPDVELLGELSKVCAAMHSPFIAAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIG LTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHFGWCSRIRGVESGGEVENLPAHTFP TDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRFA HYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVVVEEVEGNPGYYNSKFFLRPHYQLEG LTVSLRLVSKLPSAKGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec18 | YP_851426.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 1e-80 | 41 |
| aec18 | AAQ96712.1 | Aec18 | Not tested | AGI-1 | Protein | 1e-80 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tssC | YP_263146.1 | type VI secretion protein TssC | VFG2070 | Protein | 0.0 | 93 |
| tssC | YP_263146.1 | type VI secretion protein TssC | VFG2093 | Protein | 1e-84 | 42 |
| tssC | YP_263146.1 | type VI secretion protein TssC | VFG2475 | Protein | 2e-84 | 42 |
