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Name : tssB (PFL_6087) Accession : YP_263145.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : type VI secretion protein TssB Function : - COG functional category : S : Function unknown COG ID : COG3516 EC number : - Position : 6914043 - 6914558 bp Length : 516 bp Strand : + Note : See Hsu et. al. 2009 (PMID: 19400797) for more information.; identified by similarity to GB:AAG03473.1; match to protein family HMM PF05591; match to protein family HMM TIGR03358 DNA sequence : GTGGCGAAGCAAAGTTCTCAAAAGTTCATCGCGCGCAACCGCGCGCCCCGGGTGCAGATCGAGTACGACGTCGAACTCTA CGGCGCCGAGAAAAAGGTCCAGCTGCCCTTCGTCATGGGCGTGATGGCCGACCTCGCCGGCAAGCCCGTGGAGCCCCTGG CGGCCGTGGCCGATCGCAAGTTCCTGGAAATCGACGTCGATAACTTCGACTCGCGCCTCAAGGCCATGCAGCCTCGGGTG GCCTTCCACGTGCCCAACGAACTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAGAGCATGGACGACTTCAG CCCGGCGGCCGTGGCGCGCAAGGTCGATTCGTTGAACCAGTTGCTGGAAGCCCGCACCCAGCTGGCCAACCTGCTGACCT ACATGGACGGCAAGACCGGCGCCGAAGAAATCATCATGAAAGCCATCAAGGATCCGGCGTTGCTCCAGGCCCTGGCCAGT GCGCCAAAGCCTGCTGACTCCGAGCCGAACGCGTAA Protein sequence : MAKQSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPVEPLAAVADRKFLEIDVDNFDSRLKAMQPRV AFHVPNELTGEGNLSLDITFESMDDFSPAAVARKVDSLNQLLEARTQLANLLTYMDGKTGAEEIIMKAIKDPALLQALAS APKPADSEPNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0297 | NP_454879.1 | conserved hypothetical protein | Not tested | SPI-6 | Protein | 3e-58 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tssB | YP_263145.1 | type VI secretion protein TssB | VFG2069 | Protein | 8e-70 | 92 |
