|
Name : radC (PFL_6051) Accession : YP_263109.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : DNA repair protein RadC Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2003 EC number : - Position : 6873159 - 6873833 bp Length : 675 bp Strand : - Note : identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608 DNA sequence : ATGAGTATTCGTGACTGGCCCGCGGCGGAGCGTCCGCGGGAACGGCTTCTGGAGCAGGGCGCCATCAGCCTTTCCGACGC CGAGCTACTGGCTATTTTCCTGCGCACCGGGGTGGCCGGTAAAAGCGCGGTGGACCTGGCGCGGCATCTGTTGCGGCGCT TTGGCAGCCTGCGCAGGCTGCTGGAGGCCGATCAACTGACCTTTACCCGCCAACTGGGGCTGGGCCCGGCCAAGTACGCC TTGTTGCAGGCGGTGCTGGAAATGGCCCGACGGCATCTGGCGGAGAAACTGCATCGCCAGTCCGCGTTGGAGAACCCGCT GGTGGTGCGCGATTACCTGAAGTCGATGCTGCGCCACGAGCCCCATGAAGTGTTCGGTTGCCTGTTTCTCGACACGCGGC ATCGTGTACTGACCTTCGAAGTGCTGTTTCAGGGTTCCATCGACAGCACCACGGTGTACCCGCGGCAGGTGATCAAGCGC GCCTTGGCGCACAATGCAGCGGCGGTGATCCTCTGCCACAACCATCCGTCAGGCATTTGCGAGCCCAGCCCGGCCGACCG GGTAGTGACCCGACGTTTGCAGGAGGCGCTGGAGTTGATCGATGTGCGGGTGCTGGACCACTTCATCGTGGGGGAGGGCG ACCCGCTGTCGATGGCCGAGTACGGCTGGATCTGA Protein sequence : MSIRDWPAAERPRERLLEQGAISLSDAELLAIFLRTGVAGKSAVDLARHLLRRFGSLRRLLEADQLTFTRQLGLGPAKYA LLQAVLEMARRHLAEKLHRQSALENPLVVRDYLKSMLRHEPHEVFGCLFLDTRHRVLTFEVLFQGSIDSTTVYPRQVIKR ALAHNAAAVILCHNHPSGICEPSPADRVVTRRLQEALELIDVRVLDHFIVGEGDPLSMAEYGWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| yeeS | YP_854323.1 | radC-like protein YeeS | Not tested | PAI I APEC-O1 | Protein | 1e-21 | 44 |
| c5152 | NP_757000.1 | radC-like protein yeeS | Not tested | PAI II CFT073 | Protein | 1e-21 | 44 |
| yeeS | AAZ04458.1 | putative RadC-like protein | Not tested | PAI I APEC-O1 | Protein | 7e-22 | 44 |
| Z1217 | NP_286752.1 | RadC family DNA repair protein | Not tested | TAI | Protein | 8e-21 | 43 |
| yeeS | CAI43901.1 | YeeS protein | Not tested | LEE | Protein | 7e-21 | 43 |
| unnamed | AAL08475.1 | unknown | Not tested | SRL | Protein | 4e-21 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| radC | YP_263109.1 | DNA repair protein RadC | VFG1066 | Protein | 2e-21 | 43 |
