Gene Information

Name : alr (PFL_6036)
Accession : YP_263094.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Unknown
Product : alanine racemase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0787
EC number : 5.1.1.1
Position : 6858433 - 6859506 bp
Length : 1074 bp
Strand : -
Note : identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492

DNA sequence :
ATGCGCCCTGCCCGTGCCCTGATCGATCTCCAAGCCCTGCGTCACAACTACCAACTGGCCCGTGAAACCTCGGGAGTTCG
TGCTCTCGCGGTGATCAAGGCCGATGCCTATGGCCATGGCGCGGTGCGCTGCGCCCAGGCGCTGGAAGGCGAGGCCGACG
GTTTCGCCGTGGCCTGCATCGAAGAAGCCCTGGAGCTGCGCGCCGCGGGCATTCGTGCGCCGGTGCTGCTGCTGGAAGGT
TTTTTCGAAGCATCCGAGCTGGCGCTGATCGTCGAGCATGATTTCTGGTGCGTGGTGCATTCGCTGTGGCAACTCGAAGC
CATCGAGCAGGCGGCCGTGGCCAAGCCACTGACGGTCTGGCTCAAGCTGGACTCGGGCATGCATCGGGTCGGCCTGCATC
CCAAGGATTACCAGGTGGCGTATCAGCGCCTGCAGGCCAGCGGCAAGGTCGAGAAGATCGTGCTGATGAGCCACTTTGCC
CGCGCCGATGAACTGGACTGTCCGCGTAGCAGCGAGCAGGTGGCGGTATTCGAAGCGGCTCGCCAGGGCCTCGGAGCGGA
AATCAGCCTGCGCAATTCGCCGGCGGTCATGGGCTGGCCCAGCGTACCCAGCGATTGGGTGCGCCCGGGCATCATGCTCT
ACGGTTCGACGCCGTTCGAAGAAAACAACTCGGTGGCCGCGCGCTTGCAGCCGGTAATGACCCTGGAGTCCAAGGTGATC
TGCGTGCGTGAACTGCCGGCCGGCGAGCCGGTGGGCTACGGCGCCAGGTTCATCACCGACAGGCCAATGCGCATCGGCGT
GGTGGCCATGGGGTATGCCGACGGTTATCCGCGCCATGCGCCTACTGGTACGCCGGTACTGGTGGCCGGCCAGCGCAGCC
GCCTGCTGGGCCGGGTGTCCATGGACATGCTGTGTGTCGACCTGACGGACGTGCCCCAGGCCGGTCTTGGTTCGACCGTG
GAATTGTGGGGCAAGAACATCCTCGCCAGCGATGTTGCGCAGGCCGCCGATACCATCCCTTATCAGCTGTTCTGCAACCT
GCGCCGGGTACCGTTGGTGTACTGCGAAGGCTGA

Protein sequence :
MRPARALIDLQALRHNYQLARETSGVRALAVIKADAYGHGAVRCAQALEGEADGFAVACIEEALELRAAGIRAPVLLLEG
FFEASELALIVEHDFWCVVHSLWQLEAIEQAAVAKPLTVWLKLDSGMHRVGLHPKDYQVAYQRLQASGKVEKIVLMSHFA
RADELDCPRSSEQVAVFEAARQGLGAEISLRNSPAVMGWPSVPSDWVRPGIMLYGSTPFEENNSVAARLQPVMTLESKVI
CVRELPAGEPVGYGARFITDRPMRIGVVAMGYADGYPRHAPTGTPVLVAGQRSRLLGRVSMDMLCVDLTDVPQAGLGSTV
ELWGKNILASDVAQAADTIPYQLFCNLRRVPLVYCEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dadX AAC61705.1 alanine racemase Not tested PAI I CFT073 Protein 2e-69 50