Gene Information

Name : algR (PFL_6003)
Accession : YP_263061.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator AlgR
Function : -
COG functional category : K : Transcription
COG ID : COG3279
EC number : -
Position : 6823160 - 6823906 bp
Length : 747 bp
Strand : -
Note : identified by similarity to GB:AAD31823.1; match to protein family HMM PF00072; match to protein family HMM PF04397

DNA sequence : 
ATGAATGTCCTGATCGTTGATGACGAACCCCTAGCCCGCGAGCGCCTGAGCCGGATGGTCAGTGAGCTCGAGGGATACAG
TGTCCTGGAGCCTAGCGCCACCAATGGCGAAGAGGCGTTGAGCCTGATCGACAGCCTGAAGCCGGATATCGTCTTGCTCG
ACGTCCGCATGCCGGGGCTGGACGGTCTGCAGGTCGCCGGCAAGCTGTGCGAGCGCGAGACGCCTCCGGCGCTGGTGTTC
TGCGCTGCGCCGGACGAATTCGCCCTGGAGGCCTTCGATGCCAGCGGCGTCGTCCACCTGGTCAAGCCAGTGCGCTCCGA
GCTGTTGCTGGAGGCCTTGAAAAAGGCCGAGAAGCCCAACCGTGTACAACTGGCGGCACTGACCCGGCCCGCGGCCGAAA
GCGGTAACGGCCCGCGCAGCCATATCAGCGCCCGTACGCGCAAAGGCATCGAGCTCATCCCCCTGGCCCAGGTGGTGTAT
TTCATCGCCGACCATAAATACGTGACCTTGCGCCACGAGGGCGGCGAGGTGCTTCTGGATGAGCCCCTGAAGGCTCTGGA
AGATGAATTCGGCGACCGCTTTGTGCGTATCCACCGCAATGCGCTGGTGGCCCGCGAGCGTATCGAGCGTCTGCAGCGCA
CACCGTTGGGGCACTTCCAGTTGTACCTCAAGGGCCTCAATGGCGATGCGCTGATTGTCAGCCGGCGGCATGTGGCGGGC
GTGCGCAAGATGATGCAACAGCTCTAG

Protein sequence : 
MNVLIVDDEPLARERLSRMVSELEGYSVLEPSATNGEEALSLIDSLKPDIVLLDVRMPGLDGLQVAGKLCERETPPALVF
CAAPDEFALEAFDASGVVHLVKPVRSELLLEALKKAEKPNRVQLAALTRPAAESGNGPRSHISARTRKGIELIPLAQVVY
FIADHKYVTLRHEGGEVLLDEPLKALEDEFGDRFVRIHRNALVARERIERLQRTPLGHFQLYLKGLNGDALIVSRRHVAG
VRKMMQQL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00326 YP_008207791.1 Response regulator of the LytR/AlgR family Not tested AbaR25 Protein 3e-46 45
BJAB0868_00330 YP_008211656.1 Response regulator of the LytR/AlgR family Not tested AbaR26 Protein 3e-46 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
algR YP_263061.1 DNA-binding response regulator AlgR VFG0119 Protein 1e-97 84