|
Name : PFL_5946 (PFL_5946) Accession : YP_263004.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : Type II/IV secretion system protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 6758199 - 6759977 bp Length : 1779 bp Strand : + Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157 DNA sequence : ATGAGCGCCGCGCACCTTCCCCAGGACCGCTGGCTGGACCTCAGCGAACTGCTGCGTGAATTGCTGGCCCAGGGCCGCAT CAGCCAGGATACCGCCGAGCAGGCCATGAGCGTCCGGCATCAGGCAGCCGGTAACCTGCTGCATCCCCTGGAAGTGATCG CCGGCCAGCAATTGCCCGACCTGCAGCACCCCGGCGCACATCTGGACCTGGACAGCCTCACGGCCTGGCTGGCCCGGCAA GCCGGTCAGCCTTACCTGCGTATCGACCCCCTGCGCATCGACGTGGCCAGCATCACGCCGTTGATGTCCTTCGCCTTCGC CCAGCGGCACAAGATCCTTGCCGTGGCCGTGGATGGGCAGAGCGTTACCGTGGCCAGCGCCCAACCTTACGTCAGTGCCT GGGAAGCAGACCTGGCCCATGTTCTCAAGCGCACGGTGCGACGGGTGGTGGCCAGCCCGCTGGACATCCAGCGCCTGACC CTGGAGTTCTATCGCCTGGCCAAGTCGGTCAGCGGCGCCAGCAGCGAACAGAAAGCCAGTGGCCTGGGCAACTTCGAGCA ACTGCTGAAACTGGGGGCCAGCGACCAGGAGCCGGATGCCGACGATGCGCACATCGTCAATATCGTCGACTGGCTGTTCC AGTACGCCTTTCAGCAAAGGGCCAGCGACATCCATATCGAACCCCGCCGCGAGCACGGCACCCTGCGCTTTCGCATCGAT GGCGTATTGCACAACGTCTACCAGTTCCCGCCCCAGGTCACCCTGGCCATCGTCAGCCGCCTCAAGAGCCTGGGGCGCAT GAACGTCGCGGAAAAGCGCAAGCCCCAGGATGGCAGGGTCAAGACGCGCACCCCCGACGGCAGTGAAATCGAGTTGCGGC TCTCGACCCTGCCCACGGCGTTCGGTGAAAAGCTGGTGATGCGCATCTTCGATCCCCAGGTCCTGCTCAAGGATTTCGAC CAGTTAGGCTTTGGCACCGATGACCTGAGCCGCTGGCAAGCCATGACCACCCAGGCCCACGGCATCATCCTGGTCACCGG GCCCACCGGCTCGGGCAAGACCAGCACCCTCTACACCACCCTGAAGAAGCTCGCGACCCCCGAGGTCAACCTGTGCACCA TCGAGGACCCGATCGAGATGATCGAACCGGCGTTCAACCAGATGCAGGTCCAGCACAATATCGACCTGAGTTTTTCCAGC GGCGTGCGTGCACTGATGCGCCAGGACCCCGACATCATCATGATCGGCGAGATCCGTGACCTTGAGACTGCGGAAATGGC CATCCAGGCCGCACTTACCGGGCACCTGGTGCTGTCTACCCTGCACACCAACGACGCCCCCGGCGCCATCAGCCGGCTGC TGGAACTGGGCGTGCCCCATTACCTGATCAAGGCCACCCTGATCGGGGTCATGGCCCAGCGCCTGCTGCGCACCCTCTGC CCGTACTGCAAGGTTCCCGCCCAGCTGACGGAGGATGACTGGGAAAGCCTGACCGGAACCCGGCACCTGCCACCCGCTGC CGGCGGCCAGCGCGCGGTGGGCTGCGCCGAATGCCGGGGTACCGGTTACCACGGGCGCACCGGGGTCTACGAAATCATGC CCTTGGGTTCCCCCCTCAAGGCCCTGATCCATCGCGACCTGGATCTTGCCCGCCTGCACCACCAGGCCTGCGCGGACGGC ATGCGCAGCCTGCGCCTGGCTGCCGCGCACAAGGTTGCCCAAGGCCTGACCAGCCTTGAGGAAGTGCTACGGGTCACGCC CGGCAACCAGCCCCCATAG Protein sequence : MSAAHLPQDRWLDLSELLRELLAQGRISQDTAEQAMSVRHQAAGNLLHPLEVIAGQQLPDLQHPGAHLDLDSLTAWLARQ AGQPYLRIDPLRIDVASITPLMSFAFAQRHKILAVAVDGQSVTVASAQPYVSAWEADLAHVLKRTVRRVVASPLDIQRLT LEFYRLAKSVSGASSEQKASGLGNFEQLLKLGASDQEPDADDAHIVNIVDWLFQYAFQQRASDIHIEPRREHGTLRFRID GVLHNVYQFPPQVTLAIVSRLKSLGRMNVAEKRKPQDGRVKTRTPDGSEIELRLSTLPTAFGEKLVMRIFDPQVLLKDFD QLGFGTDDLSRWQAMTTQAHGIILVTGPTGSGKTSTLYTTLKKLATPEVNLCTIEDPIEMIEPAFNQMQVQHNIDLSFSS GVRALMRQDPDIIMIGEIRDLETAEMAIQAALTGHLVLSTLHTNDAPGAISRLLELGVPHYLIKATLIGVMAQRLLRTLC PYCKVPAQLTEDDWESLTGTRHLPPAAGGQRAVGCAECRGTGYHGRTGVYEIMPLGSPLKALIHRDLDLARLHHQACADG MRSLRLAAAHKVAQGLTSLEEVLRVTPGNQPP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-64 | 42 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-64 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PFL_5946 | YP_263004.1 | Type II/IV secretion system protein | VFG2048 | Protein | 7e-64 | 42 |
| PFL_5946 | YP_263004.1 | Type II/IV secretion system protein | VFG0112 | Protein | 4e-64 | 42 |
