Gene Information

Name : cadR (PFL_5893)
Accession : YP_262951.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Resistance
Product : Cd(II)/Pb(II)-responsive transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG0789
EC number : -
Position : 6703919 - 6704368 bp
Length : 450 bp
Strand : +
Note : identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02047

DNA sequence : 
ATGAAGATTGGCGAACTGGCGAAACTCACCGACTGTCAGGTCGAGACCATCCGTTACTACGAGCGCGAAGGGCTGCTGCC
CGAACCGGCCCGCAGTGAAGGCAACTATCGCCTCTACACCCAGGCCCACACCGAGCGCCTGACCTTTATCCGCAATTGCC
GCAGCCTGGACATGACCCTCGAGGAGATCCGCAGCCTGCTCAACCTGCGCGACAGCCCCCAGGACCAGTGCGCCAGCGTC
AACGCCCTGATCGACGAGCATATCCATCACGTCAAGGCGCGCATCGACGGCTTGCTGGCCCTGCAGGAACAACTGCTGGA
CCTGCGCCAGCGCTGCAGCGAGGGCCCGGACCTTGAGCACTGCGGAATTCTCCAGCGCCTGGAAGTCAGCGGCTCGGTGG
CCCCCAATGAGAGCGAGCCCTCCCATGTCGGGCGCAGCCACGGGCACTGA

Protein sequence : 
MKIGELAKLTDCQVETIRYYEREGLLPEPARSEGNYRLYTQAHTERLTFIRNCRSLDMTLEEIRSLLNLRDSPQDQCASV
NALIDEHIHHVKARIDGLLALQEQLLDLRQRCSEGPDLEHCGILQRLEVSGSVAPNESEPSHVGRSHGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C98 AAN62191.1 putative transcriptional regulator Not tested PAGI-2(C) Protein 2e-30 56
ACICU_00234 YP_001844893.1 transcriptional regulator Not tested AbaR20 Protein 9e-29 51
pbrR CAJ77094.1 Transcriptional regulator Not tested AbaR1 Protein 6e-29 51
cadR AGK36653.1 MerR family transcriptional regulator Not tested AbaR26 Protein 6e-29 51
cadR ACN81029.1 MerR family transcriptional regulator Not tested AbaR5 Protein 8e-29 51
cadR ACS32041.1 MerR family transcriptional regulator Not tested AbaR5 Protein 2e-28 50
cadR ADZ05769.1 MerR family transcriptional regulator Not tested AbaR11 Protein 1e-28 50
pbrR CAJ77021.1 transcription regulator Not tested AbaR1 Protein 1e-28 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cadR YP_262951.1 Cd(II)/Pb(II)-responsive transcriptional regulator BAC0058 Protein 5e-46 77
cadR YP_262951.1 Cd(II)/Pb(II)-responsive transcriptional regulator BAC0301 Protein 6e-33 57