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Name : dnaB_2 (PFL_0583) Accession : YP_257725.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 677204 - 678601 bp Length : 1398 bp Strand : + Note : identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 DNA sequence : ATGAACGATATCTCCGCTCCCGAGCAATACGATCTGCAAACCGCTGCCCTGAAGGTGCCGCCGCACTCCATCGAGGCCGA ACAGGCCGTGCTCGGTGGTCTGATGCTGGACAACAACGCCTGGGAGCGCGTGTTGGATCAAGTGTCCGACGGCGATTTCT ACCGGCATGACCACCGTTTGATCTTCCGCGCCATCGCCAAGCTGGCCGACCAGAACATGCCCATCGACGTGGTCACCCTG TCCGAGCAACTGGACAAGGAAGGCCAGACTTCGCAGGTCGGCGGCCTGGGCTACCTGGGTGAACTGGCGAAGAACACTCC GTCGGTGGCCAACATCAAGGCCTATGCGCAGATCGTTCGCCAGCGGGCCACCCTGCGTCAGCTGATCGGCATCAGCACCG AGATCGCCGACAGTGCCTTCAACCCGGAAGGGCGCACCGCCGAAGAGATTCTCGACGAGGCCGAGCGGCAGATCTTCCAG ATCGCCGAAGCGCGGCCCAAGACCGGCGGCCCGGTGGGGGTCAACGAACTGCTGACCAAGGCCATCGACCGCATCGATAC CCTGTTCAACACGGACAACGCCATCACCGGCCTGTCCACCGGCTATACCGATCTCGACGAGAAGACCAGCGGCCTGCAGC CGGCCGACTTGATCATCGTCGCCGGCCGTCCGTCCATGGGTAAGACCACCTTCGCCATGAACCTGGTGGAGAACGCGGTA CTGCGCAGCGACAAGGCGGTGCTGGTGTACTCCCTGGAGATGCCAGGTGAATCGCTGATCATGCGTATGCTCTCCTCCCT GGGCCGCATCGACCAGACCAAGGTCCGTTCCGGCCAGCTGGAAGACGACGACTGGCCACGCCTGACCTCGGCGGTCAACC TGCTCAACGACCGCAAGCTGTTCATCGACGACACCGCGGGCATCAGCCCCTCGGAGATGCGTGCGCGGACCCGGCGCCTG GTGCGTGAGCACGGCGATATCGCCATGATCATGATCGACTACCTGCAGCTCATGCAGATTCCAGGCTCCAGCGGCGACAA CCGGACCAACGAGATTTCCGAGATTTCCCGGTCCCTGAAGGCCCTGGCCAAGGAGTTCAACTGCCCGGTAGTGGCCCTGT CCCAGCTCAACCGCTCCCTGGAACAACGTCCCAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAG CAGGACGCCGACGTGATCATGTTCGTCTACCGGGACGAGGTGTATCACCCGGAAACCGAGCACAAGGGCATTGCCGAGAT CATCATCGGCAAGCAGCGGAACGGCCCCATCGGCTTTATCCGCCTGGCGTTCATCGGCAAGTACACCCGCTTCGAGAACC TCGCCCCGGGCAGCTACAACTTCGACGACGACGAATAA Protein sequence : MNDISAPEQYDLQTAALKVPPHSIEAEQAVLGGLMLDNNAWERVLDQVSDGDFYRHDHRLIFRAIAKLADQNMPIDVVTL SEQLDKEGQTSQVGGLGYLGELAKNTPSVANIKAYAQIVRQRATLRQLIGISTEIADSAFNPEGRTAEEILDEAERQIFQ IAEARPKTGGPVGVNELLTKAIDRIDTLFNTDNAITGLSTGYTDLDEKTSGLQPADLIIVAGRPSMGKTTFAMNLVENAV LRSDKAVLVYSLEMPGESLIMRMLSSLGRIDQTKVRSGQLEDDDWPRLTSAVNLLNDRKLFIDDTAGISPSEMRARTRRL VREHGDIAMIMIDYLQLMQIPGSSGDNRTNEISEISRSLKALAKEFNCPVVALSQLNRSLEQRPNKRPVNSDLRESGAIE QDADVIMFVYRDEVYHPETEHKGIAEIIIGKQRNGPIGFIRLAFIGKYTRFENLAPGSYNFDDDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 6e-120 | 58 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 2e-107 | 55 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 3e-105 | 52 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 1e-104 | 52 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 2e-104 | 50 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 8e-98 | 48 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-96 | 46 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-96 | 46 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 1e-79 | 42 |
