|
Name : tkt (PFL_5786) Accession : YP_262844.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0021 EC number : 2.2.1.1 Position : 6591770 - 6593767 bp Length : 1998 bp Strand : - Note : identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232 DNA sequence : ATGCCAAGCCGTCGTGAGCGTGCCAACGCCATTCGTGCCCTCAGCATGGATGCCGTGCAAAAAGCCAACAGCGGCCATCC AGGTGCCCCTATGGGTATGGCGGATATCGCCGAAGTACTTTGGCGTGACTACCTGAAGCACAACCCGAGCAACCCATCCT TCGCCGACCGCGACCGCTTCGTGCTGTCCAATGGCCACGGCTCGATGTTGATCTACTCGCTGCTGCACCTGACCGGCTAC GACCTGTCGATCGATGACCTGAAGAACTTCCGCCAACTGCACAGCCGCACCCCGGGCCACCCGGAGTTTGGTTACACCCC AGGCGTGGAAACCACCACCGGCCCGCTGGGCCAGGGCCTGGCCAACGCTGTGGGCTTTGCCCTGGCGGAGAAAGTCCTGG CGGCGCAGTTCAACCGTCCAGGCCACAACATTGTCGACCATCACACCTACGTGTTCCTGGGTGATGGCTGCATGATGGAA GGCATTTCCCACGAAGTCGCTTCCCTGGCCGGCACCCTGGGCCTGGGCAAGCTGATCGCCTTCTACGATGACAACGGCAT CTCCATCGACGGCGAAGTCGAAGGCTGGTTCACCGACGACACGCCCAAGCGTTTCGAAGCCTATAACTGGCAAGTGATCC GCAACGTCGACGGCCACGATCCGGAAGAGATCAAGACCGCCATCGACACCGCGCGCAAGAGCCCGCTGCCGACTCTGATC TGCTGCAAGACCACCATCGGTTTCGGTTCGCCGAACAAGCAGGGCAAGGAAGATTGCCACGGCGCGCCACTGGGCGACGC GGAAATCGCCCTGACCCGCCAGGCGCTGAACTGGAACTACGGCCCGTTCGAAATCCCGGCCGACATTTATGCCGAGTGGG ATGCCAAGGAAAAAGGTCGCGCTGCCGAAGCCGAGTGGGACCAGCGTTTCGCGGCCTATTCCGCTGCATTCCCAACCGAA GCCAACGAACTGGTACGTCGCCTTAGCGGTGACCTGCCTGCCGACTTCGCCGAGAAGGCCGACGCCTACATCGCCGAAGT GGCCGCCAAGGGCGAAACCATCGCCAGCCGCAAGGCCAGCCAGAACACCCTGAATGCCTTCGGCCCCCTGCTGCCGGAAG TGCTCGGTGGGTCGGCCGACTTGGCCGGTTCCAACCTGACCCTGTGGAAAGGTTGCAAGGGTGTCAGCGCTGAAGATGCC AGCGGCAACTACATGTACTACGGCGTGCGCGAGTTCGGCATGACCGCCATCATGAACGGTGTTGCCCTGCACGGCGGCCT GGTGCCTTACGGCGCGACCTTCCTGATGTTCATGGAATACGCCCGCAACGCAGTGCGCATGTCGGCGCTGATGAAGAAGC GTGTGATCCATGTCTACACCCACGACTCCATCGGTCTGGGCGAAGACGGCCCGACGCACCAGCCGATCGAGCAACTGACC AGCCTGCGTACCACGCCGAACCTCGACACCTGGCGCCCGGCCGATGCCGTTGAATCGGCGGTGGCCTGGAAAAACGCGCT GGAGCGTAAAGACGGCCCTTCGGCGCTGATCTTCTCGCGCCAGAACCTGCAGCACCAAACCCGCGATGCCGGCCAGATCG CCGACATCAGCCGCGGTGGCTATGTGTTGAAGGACTGCGCAGGCGAGCCTGAACTGATCCTGATCTCCACCGGTTCGGAA GTCGGCCTGGCCGTTCAGGCCTACGACAAACTGACCGAGCAAGGCCGCAAGGTGCGCGTGGTTTCCATGCCTTGCACCAG CGTGTTCGACGCTCAGGACGCTGGCTACAAGCAATCGGTTCTGCCGCTGCAGGTCAGCGCACGTATCGCGATCGAAGCGG CTCATGCCGACTTCTGGTTCAAGTACGTGGGTCTGGAAGGTCGCGTGATCGGCATGACCACCTACGGCGAATCGGCTCCG GCTTCGGCACTGTTCGAAGAGTTCGGCTTCACCCTGGACAACATCCTGGGCCAGGCCGAAGAGTTGCTGGAAGACTAA Protein sequence : MPSRRERANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYLKHNPSNPSFADRDRFVLSNGHGSMLIYSLLHLTGY DLSIDDLKNFRQLHSRTPGHPEFGYTPGVETTTGPLGQGLANAVGFALAEKVLAAQFNRPGHNIVDHHTYVFLGDGCMME GISHEVASLAGTLGLGKLIAFYDDNGISIDGEVEGWFTDDTPKRFEAYNWQVIRNVDGHDPEEIKTAIDTARKSPLPTLI CCKTTIGFGSPNKQGKEDCHGAPLGDAEIALTRQALNWNYGPFEIPADIYAEWDAKEKGRAAEAEWDQRFAAYSAAFPTE ANELVRRLSGDLPADFAEKADAYIAEVAAKGETIASRKASQNTLNAFGPLLPEVLGGSADLAGSNLTLWKGCKGVSAEDA SGNYMYYGVREFGMTAIMNGVALHGGLVPYGATFLMFMEYARNAVRMSALMKKRVIHVYTHDSIGLGEDGPTHQPIEQLT SLRTTPNLDTWRPADAVESAVAWKNALERKDGPSALIFSRQNLQHQTRDAGQIADISRGGYVLKDCAGEPELILISTGSE VGLAVQAYDKLTEQGRKVRVVSMPCTSVFDAQDAGYKQSVLPLQVSARIAIEAAHADFWFKYVGLEGRVIGMTTYGESAP ASALFEEFGFTLDNILGQAEELLED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 0.0 | 72 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 0.0 | 66 |
