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Name : choV (PFL_5764) Accession : YP_262822.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : choline ABC transporter ATP-binding protein Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG4175 EC number : - Position : 6564317 - 6565495 bp Length : 1179 bp Strand : + Note : identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186; match to protein family HMM TIGR03415 DNA sequence : ATGAGCATTATCCGCTTCGACAAGGTCGACGTGATTTTCTCCAAGGACCCGCGCGAGCCCCTCAAGCTGCTGGACCAGGG CATGACCCGCAACGAGATCCTGAAGAAGACCGGGCAGATCGTCGGCGTCGAGAATGCCAGCCTGGACATCGAGAAAGGCG AGATCTGCGTGCTGATGGGCCTCTCCGGTTCCGGCAAGTCGAGCCTGCTGCGCTGCATCAACGGCCTGAACACCGTGAGC CGCGGCAAGCTGTTCGTCGAGCATGAAGGCAAGCAGATCGACATCGCCTCCTGCAGCCCCGCCGAGCTGAAGATGATGCG CACCAAGCGCATCGCCATGGTGTTCCAGAAGTTCGCCCTGATGCCCTGGCTGACCGTGCGCGAAAACATCAGCTTCGGCC TGGAGATGCAGGGCCGCCCGGAAAAGGAACGGCGCAAGCTGGTGGACGAGAAGCTTGAGCTGGTGGGCCTGACCCAGTGG CGCAACAAGAAGCCCGACGAACTCTCCGGCGGCATGCAGCAGCGCGTGGGCCTGGCCCGTGCCCTGGCCATGGACGCCGA TATCCTGCTGATGGACGAACCCTTCTCGGCCCTCGACCCGCTGATCCGCCAGGGCCTGCAGGACGAACTGCTGGAGCTGC AGCGCAAGCTGAGCAAGACCATCGTCTTCGTCAGCCACGACCTGGATGAGGCCCTGAAGCTGGGCAGCCGCATCGCCATC ATGAAAGACGGACGGATCATCCAGTACAGCAACCCGGAAGAAATCGTGCTCAACCCGGCGGACGACTATGTACGGACTTT CGTTGCCCACACCAACCCACTGAACGTGCTGTGCGGGCGCAGCCTGATGCGCAGCCTGGACAACTGCAAGCGGGTCAACG GCTCGGTATGCCTGGACCCGGGCGGCGATTCCTGGCTCGACCTGGCCGAAGGCAACACCATCAAGGGCGCACGCCGCAAC GGCTCGCAGCTGGACCTGCAGAACTGGGTTCCGGGGCAAGCCGTGGAAGAACTGGGCCGACGCCCGACCCTGGTGGACTC CAGCATCGGCATGCGCGATGCCCTGCAGATCCGCTACCAGACCGGCAACAAACTGGTGCTCCACGACAACCAGAAAGTGG TGGGCATCCTTGGCGACAGCGAGCTCTACCACGCGCTGCTCGGCAAGAACCTGGGTTAA Protein sequence : MSIIRFDKVDVIFSKDPREPLKLLDQGMTRNEILKKTGQIVGVENASLDIEKGEICVLMGLSGSGKSSLLRCINGLNTVS RGKLFVEHEGKQIDIASCSPAELKMMRTKRIAMVFQKFALMPWLTVRENISFGLEMQGRPEKERRKLVDEKLELVGLTQW RNKKPDELSGGMQQRVGLARALAMDADILLMDEPFSALDPLIRQGLQDELLELQRKLSKTIVFVSHDLDEALKLGSRIAI MKDGRIIQYSNPEEIVLNPADDYVRTFVAHTNPLNVLCGRSLMRSLDNCKRVNGSVCLDPGGDSWLDLAEGNTIKGARRN GSQLDLQNWVPGQAVEELGRRPTLVDSSIGMRDALQIRYQTGNKLVLHDNQKVVGILGDSELYHALLGKNLG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| opuAA | YP_281521.1 | glycine betaine transport ATP-binding protein | Not tested | Not named | Protein | 8e-59 | 42 |
