Gene Information

Name : pilR (PFL_5309)
Accession : YP_262377.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 6075147 - 6076481 bp
Length : 1335 bp
Strand : +
Note : identified by similarity to SP:Q00934; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954

DNA sequence : 
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCTGGCCACGGACTGCGCAACGGATGACCCTGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAGCGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGATCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCGGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Protein sequence : 
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKLATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPINCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-87 46
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-87 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_262377.1 Fis family transcriptional regulator BAC0089 Protein 2e-68 44
pilR YP_262377.1 Fis family transcriptional regulator BAC0467 Protein 2e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_262377.1 Fis family transcriptional regulator VFG1214 Protein 2e-128 64