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Name : clpB (PFL_5304) Accession : YP_262372.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : ATP-dependent chaperone protein ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 6068808 - 6071372 bp Length : 2565 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 DNA sequence : ATGCGTATAGACCGATTAACCAGCAAATTGCAGCTGGCCTTATCCGATTCTCAATCTCTGGCGGTTGGCCTCGATCATCC GGCCATTGAACCGGCGCACCTGATGCAGGCGCTGCTGGAACAGCAGGGCGGCTCGATCAAGCCTCTGCTGATGCAGGTGG GCTTCGACGTCAACAGCCTGCGCAAGGAACTGAGCAAAGAGCTCGACCAACTGCCGAAAATCCAGAACCCCACTGGCGAC GTCAACATGTCCCAGGATCTGGCGCGCCTGCTCAACCAGGCCGACCGCCTGGCGCAGCAGAAAGGCGACCAGTTCATCTC CAGCGAGCTGGTGCTACTGGCCGCCATGGATGAGAACAGCAAACTCGGCAAATTGTTGCTGGGCCAGGGCGTGAGCAAGA AAGCCCTGGAGAACGCTATCAACAACCTGCGTGGCGGTGAGGCGGTGAATGACGCCAACGTCGAAGAGTCGCGCCAGGCC CTGGACAAGTACACCGTCGACCTGACCAAGCGCGCCGAAGACGGCAAGCTTGATCCGGTAATCGGCCGTGACGACGAAAT TCGCCGGACCATCCAGGTGCTGCAACGCCGGACCAAGAACAACCCGGTGCTGATTGGTGAACCAGGCGTGGGTAAGACCG CCATCGCCGAAGGCCTGGCCCAGCGGATCATCAACGGCGAAGTGCCCGATGGCCTCAAAGGCAAGCGCTTGCTGTCCCTG GACATGGGCGCCTTGATCGCCGGTGCCAAATACCGTGGCGAGTTCGAAGAACGCCTGAAGTCTTTGCTTAATGAACTGTC GAAGCAGGAAGGGCAGATCATCCTGTTCATCGATGAGCTGCACACCATGGTCGGCGCTGGTAAAGGCGAAGGCTCGATGG ATGCGGGCAATATGCTCAAGCCGGCCCTGGCCCGTGGCGAGCTGCACTGCGTGGGCGCCACCACGCTCAACGAATACCGC CAATATATAGAGAAGGACGCAGCCCTCGAGCGGCGCTTCCAGAAAGTGTTGGTGGATGAGCCGAGCGAGGAAGACACCAT TGCTATCCTGCGCGGCCTGAAAGAGCGCTATGAGGTGCACCACAAGGTGGCGATCACCGACGGCGCGATCATTGCCGCGG CCAAGCTCAGCCATCGTTACATCACTGACCGGCAACTGCCGGACAAGGCCATCGACCTGATCGACGAGGCCGCCAGCCGC ATCCGCATGGAGATCGACTCTAAGCCGGAAGTGCTGGACCGTCTGGAGCGGCGCCTGATTCAGCTCAAGGTTGAATCCCA GGCCCTGAAGAAAGAAGACGACGAGGCCGCGATCAAGCGCCTGGAAAAACTCCAGGAAGAGATTGTCCGCCTGGAGCGTG AATACGCTGACCTGGAAGAAGTCTGGACCTCGGAGAAAGCCGAAGTGCAGGGTTCTGCGCAGATCCAGCAGAAGATCGAG CAGTCGCGCCAGGAACTGGAAGCGGCGCGTCGTAAAGGCGATCTCAATCGTATGGCCGAGCTGCAGTACGGGGTGATCCC GGACCTGGAGCGCAGCCTGCAGATGGTCGACCAGCACGGCCACAGCGAGAACCAGTTGCTGCGCAGCAAGGTTACCGAGG AAGAGATTGCCGAAGTGGTGTCCAAGTGGACCGGCATTCCAGTGTCGAAAATGCTTGAAGGCGAGCGCGACAAGCTGCTG AAGATGGAAAGCCTGCTGCACGAGCGGGTGATTGGCCAGAACGAAGCCGTGGTGGCGGTGGCCAACGCTGTGCGCCGTTC CCGAGCCGGGTTGTCCGACCCGAACCGGCCCAGCGGTTCGTTCATGTTCCTCGGCCCGACCGGCGTGGGTAAGACCGAAC TGTGCAAGGCCCTGGCGGAATTCCTCTTCGATACCGAAGAGGCCATGGTGCGGATCGACATGTCCGAGTTCATGGAGAAA CATTCCGTGGCTCGCCTGATCGGTGCGCCACCAGGCTATGTCGGTTATGAAGAGGGCGGTTACCTGACCGAAGCCGTGCG TCGCAAGCCGTACTCGGTGATTCTGCTGGACGAAGTCGAGAAGGCGCACCCGGATGTGTTCAACATCCTGCTGCAGGTCC TGGAAGATGGCCGTCTGACGGACAGCCACGGGCGTACCGTGGATTTTCGCAATACGGTGATCGTCATGACCTCCAACCTG GGGTCGGCGCAGATCCAGGAACTGGTAGGGGATCGCGAGGCACAACGTGCGGCGGTGATGGACGCGGTGTCCACCCACTT CCGGCCGGAGTTCATCAACCGGGTCGACGAAGTGGTGATCTTCGAGCCTCTGGCACGTGATCAGATCGCCGGCATCACGC AGATCCAGTTGGGTCGCCTGCGCAGTCGCCTGGCGGAGCGCGAGCTGAGCCTGGAACTGAGCGACGAGGCCTTGGACAAG CTGATCGCTGTGGGTTACGACCCGGTGTATGGCGCACGGCCGCTGAAACGGGCGATCCAGCGCTGGATCGAGAACCCGTT GGCGCAGTTGATCCTCTCCGGCGGTTTCCTGCCGGGAGCCACGGTTACCGCCTCGGTGCAGGACGACGAAATCGTCTTCG CCTGA Protein sequence : MRIDRLTSKLQLALSDSQSLAVGLDHPAIEPAHLMQALLEQQGGSIKPLLMQVGFDVNSLRKELSKELDQLPKIQNPTGD VNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSKLGKLLLGQGVSKKALENAINNLRGGEAVNDANVEESRQA LDKYTVDLTKRAEDGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEVPDGLKGKRLLSL DMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYR QYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASR IRMEIDSKPEVLDRLERRLIQLKVESQALKKEDDEAAIKRLEKLQEEIVRLEREYADLEEVWTSEKAEVQGSAQIQQKIE QSRQELEAARRKGDLNRMAELQYGVIPDLERSLQMVDQHGHSENQLLRSKVTEEEIAEVVSKWTGIPVSKMLEGERDKLL KMESLLHERVIGQNEAVVAVANAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEK HSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSNL GSAQIQELVGDREAQRAAVMDAVSTHFRPEFINRVDEVVIFEPLARDQIAGITQIQLGRLRSRLAERELSLELSDEALDK LIAVGYDPVYGARPLKRAIQRWIENPLAQLILSGGFLPGATVTASVQDDEIVFA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-150 | 44 |
