Gene Information

Name : dksA (PFL_5270)
Accession : YP_262342.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Unknown
Product : RNA polymerase-binding protein DksA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG1734
EC number : -
Position : 6034645 - 6035085 bp
Length : 441 bp
Strand : +
Note : identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420

DNA sequence :
ATGCCCACCCAAGCAAAGCAACAGATTCAATCGATCAGCGGTTTTGAACCTTACGTTGAAACTGCGGGCGAAGAGTACAT
GGGCAAGCCCATGCGCGAGCACTTCACCAAGATCCTGAACAAGTGGAAACAGGACTTGATGCAGGAAGTCGACCGCACTG
TTGATCACATGAAAGACGAAGCGGCCAACTTCCCCGACCCGGCTGACCGTGCCAGCCAGGAAGAAGAGTTCAGCCTCGAA
CTGCGGGCCCGCGATCGCGAGCGCAAGTTGATCAAGAAGATCGACAAGACCCTGCAACTGATCGAAGACGAAGAATACGG
CTGGTGCGAATCCTGCGGCGTCGAGATCGGTATCCGCCGGCTGGAAGCCCGCCCAACCGCCGACATGTGCGTCGACTGCA
AGACACTGGCGGAAATCAAGGAAAAACAGGTCGGCAAATAA

Protein sequence :
MPTQAKQQIQSISGFEPYVETAGEEYMGKPMREHFTKILNKWKQDLMQEVDRTVDHMKDEAANFPDPADRASQEEEFSLE
LRARDRERKLIKKIDKTLQLIEDEEYGWCESCGVEIGIRRLEARPTADMCVDCKTLAEIKEKQVGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00314 YP_008207779.1 DnaK suppressor protein Not tested AbaR25 Protein 3e-41 62
BJAB0868_00318 YP_008211644.1 DnaK suppressor protein Not tested AbaR26 Protein 3e-41 62