Gene Information

Name : PFL_5111 (PFL_5111)
Accession : YP_262190.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5871831 - 5872505 bp
Length : 675 bp
Strand : +
Note : identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
GTGCATATTCACCTGCTGCTGGTCGAGGACAACCTCGACCTGGCCAATACCGTCATCGAGTACCTGGAAATCGGCGGCAT
CGTCTGCGACCACGCCAGCAACGGCCAGACCGGCCTTAACCTGGCCCTGAGCCAGCATTACGACGTGATCCTCCTCGACA
TCATGCTGCCGCGGCTGGACGGCCAGCAGCTGTGCGAACAACTGCGCCAGAACGGCAGCCAGACCCCCATCCTCATGCTC
ACCTCGCTGGATGCCCTGTCGGACAAGCTCGCCAGCTTTGCCGCCGGTGCCGACGATTATCTGGTCAAGCCCTTCGAACT
GGCCGAGCTGGTGGCCAGGATCCGTGCCCTGAGCCTGCGCCGCAGCGGCCAGGCCAGCCGCCTGCAGGTGGCCGACCTGG
TAATGGAGCTGACCACCCGCAAGGTCAGCCGCGCCGGCCAGGAGCTGCACCTGTCGCCCATCTGCTGGACCCTGCTGGAA
TGCCTGATGCGCGCCAGCCCCGAGCCTGTCACCCGGGAACGCCTGGAGGCGACGATCTGGGGCGACGAGCCGCCCGACAG
CAACACCCTCAAGGTGCATATGCACCGGCTGCGCAAGACTGTGGACAAGTCCTTCGACCAGCCCCTGATCCACACCCTTC
CCGGTATTGGCATACAGCTGAGGTCACATGCGTAA

Protein sequence : 
MHIHLLLVEDNLDLANTVIEYLEIGGIVCDHASNGQTGLNLALSQHYDVILLDIMLPRLDGQQLCEQLRQNGSQTPILML
TSLDALSDKLASFAAGADDYLVKPFELAELVARIRALSLRRSGQASRLQVADLVMELTTRKVSRAGQELHLSPICWTLLE
CLMRASPEPVTRERLEATIWGDEPPDSNTLKVHMHRLRKTVDKSFDQPLIHTLPGIGIQLRSHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_5111 YP_262190.1 DNA-binding response regulator BAC0125 Protein 2e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_5111 YP_262190.1 DNA-binding response regulator VFG0473 Protein 3e-28 41
PFL_5111 YP_262190.1 DNA-binding response regulator VFG0596 Protein 2e-31 41