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Name : murD (PFL_5063) Accession : YP_262142.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0771 EC number : 6.3.2.9 Position : 5824874 - 5826220 bp Length : 1347 bp Strand : - Note : identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01087 DNA sequence : GTGTCTCTGATCGCTTCTGACCACTTCCGCATCGTTGTCGGCCTCGGCAAGAGCGGCATGTCCCTGGTTCGCTTCCTGGC GAGCCGGGGCGTTGCCTTTGCGGTGGCCGATACGCGGGAAAATCCACCTGAGCTGGCCACGCTGCGGCGTGACTACCCGC AGGTGGAGGTGCGTTGTGGCGAGCTGGACGTGGACTTCCTGTGCCGTGCCGACGAACTCTACGTGAGCCCTGGCCTGGCC CTGGCGACCCCGGCCCTGCAGGCTGCTGCTGCCCGTGGGGTGAAATTGTCCGGTGATATCGAGCTGTTCGCGCGTAACGC AAAGGCACCGATCGTGGCAATCAGTGGTTCCAACGCCAAGAGCACCGTGACCACCCTGGTGGGCGAGATGGCAGCGGCGG CGGGCAAGCGCGTGGCGGTCGGCGGCAACCTCGGGACCCCGGCCCTGGACCTGCTCAGCGATGACGTCGAGCTGTACGTG ATGGAGCTGTCCAGCTTCCAGCTGGAGACCACCGACCAGTTGGGCGCCGAAGTGGCCACCGTGCTCAACATCAGCGAAGA CCACATGGACCGTTACAGCGGCCTGCCGGCCTACCACCTGGCCAAGCACCGGATCTTCCGTGGCGCCCGGCAGGTGGTCT TCAACCGCCAGGACGCTCTGACCCGGCCATTGATCGGTGAAGGCCTGCCATGCTGGACCTTCGGCTTGAGCAAGCCTGAT TTCAAGGCCTTCGGCCTGCGCGAAGAGGACGGTGAGAAGTACCTGGCCTTCGAGTTCCAGAACCTGATGCCCGTGCGCGA GCTGAAGATCCGCGGCGCCCATAACCAGTCCAACGCCCTGGCAGCCTTGGCCTTGGGTCATGCAGTGGGCTTGCCGTTCG ACGCCATGCTCGCGGCGCTGCGCACTTTCGCCGGCCTCGAGCATCGCTGCCAGTGGGTTCGCGACCTGGATGGCGTGGCG TACTACAACGACTCCAAGGCCACCAACGTGGGCGCCGCCCTGGCGGCCATCGAAGGCCTTGGCGCCGACATCGAAGGCAA GATCGTGCTGATCGCCGGTGGTGACGGCAAGGGCGCCGACTTCAAGGATCTGCGCGGCCCGGTGGCGGCCAACTGCCGCG CGGTGATCCTGATGGGGCGCGACTCCGATCAGATCGGCGAAGCCATCGGTGACGCCGTGCCGCTGATTCGTGTCGGCTCG CTGCAGGAAGCCGTGGAGCAATGCCGCGCCACTGCCCAGCCCGGTGATGTGGTGCTGCTGTCGCCGGCCTGCGCCAGTTT CGACATGTTCAAGAACTACGAAGACCGTGGCCACCAGTTCGTCCGCATTGTGGAGGAACTGGCATGA Protein sequence : MSLIASDHFRIVVGLGKSGMSLVRFLASRGVAFAVADTRENPPELATLRRDYPQVEVRCGELDVDFLCRADELYVSPGLA LATPALQAAAARGVKLSGDIELFARNAKAPIVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPALDLLSDDVELYV MELSSFQLETTDQLGAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVFNRQDALTRPLIGEGLPCWTFGLSKPD FKAFGLREEDGEKYLAFEFQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLAALRTFAGLEHRCQWVRDLDGVA YYNDSKATNVGAALAAIEGLGADIEGKIVLIAGGDGKGADFKDLRGPVAANCRAVILMGRDSDQIGEAIGDAVPLIRVGS LQEAVEQCRATAQPGDVVLLSPACASFDMFKNYEDRGHQFVRIVEELA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00311 | YP_008207776.1 | UDP-N-acetylmuramoylalanine-D-glutamate ligase | Not tested | AbaR25 | Protein | 4e-87 | 55 |
| BJAB0868_00315 | YP_008211641.1 | UDP-N-acetylmuramoylalanine-D-glutamate ligase | Not tested | AbaR26 | Protein | 4e-87 | 55 |
