Gene Information

Name : PFL_5050 (PFL_5050)
Accession : YP_262129.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5810034 - 5810711 bp
Length : 678 bp
Strand : +
Note : identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGCGCGTTCTGATTATCGAAGACGAAGAAAAAACGGCCGATTACCTGCACCGCGGGTTGACCGAGCAAGGCTACACCGT
CGACCTGGCCCGGGACGGCGTCGAAGGCCTGCACATGGCTCTGGAGGGCGACTATGCCGTGATAGTGCTGGATGTGATGC
TGCCCGGCCTGGATGGCTTTGGCGTATTGCGAGCACTGCGTGCGCGCAAGCAGACCCCGGTGATCATGCTCACCGCCCGC
GAACGCGTGGAAGACCGCATCAAGGGCCTGCGCGATGGCGCCGACGACTACCTGGGCAAGCCCTTCTCCTTCCTTGAACT
GGTGGCCCGCCTGCAAGCCCTGACCCGTCGCAGCGGTGGGCATGAGCCGGTGCAGATCAGCATCGCCGACCTGTGGATCG
ACCTGATCAGCCGCAAGGCCAGCCGTGCCGGCAGCCGCCTGGACCTGACCGCCAAGGAGTTTTCCCTGCTCAGCGTGCTG
GCCCGGCGCCAGGGCGAGATCCTGTCCAAGACCGCCATCGCTGAAATGGTCTGGGACATCAATTTCGACAGCGACGCGAA
TGTCGTCGAAGTGGCGATCAAGCGCCTGCGGGCCAAGCTCGACGGCCCCTTCGAACAGAAACTGCTGCACACCATCCGTG
GCATGGGCTATGTGCTGGAGAGCCGCGGTGCCGAGTAA

Protein sequence : 
MRVLIIEDEEKTADYLHRGLTEQGYTVDLARDGVEGLHMALEGDYAVIVLDVMLPGLDGFGVLRALRARKQTPVIMLTAR
ERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGGHEPVQISIADLWIDLISRKASRAGSRLDLTAKEFSLLSVL
ARRQGEILSKTAIAEMVWDINFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLESRGAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-56 56
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-56 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator BAC0197 Protein 6e-60 58
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator BAC0125 Protein 1e-63 57
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator BAC0083 Protein 9e-58 55
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator BAC0638 Protein 3e-51 55
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator BAC0111 Protein 4e-59 52
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator BAC0308 Protein 4e-56 51
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator BAC0347 Protein 2e-52 50
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator VFG0596 Protein 5e-57 56
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator VFG1389 Protein 2e-38 47
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator VFG1386 Protein 3e-36 44
PFL_5050 YP_262129.1 DNA-binding heavy metal response regulator VFG1390 Protein 7e-41 42