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Name : PFL_5046 (PFL_5046) Accession : YP_262125.2 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : methyl-accepting chemotaxis protein Function : - COG functional category : N : Cell motility COG ID : COG0840 EC number : - Position : 5803572 - 5805155 bp Length : 1584 bp Strand : - Note : identified by similarity to GB:AAG04950.1; match to protein family HMM PF00015 DNA sequence : ATGAAGATCAACCTTCCGGTTACTGGGCGAAACGTGGACTTTGCCCCTGATGCGAATATCCTTTCGACCACTGATCTGAC TAGCGCGATCACCTACGCCAACCCTGATTTCATCAAGATCAGTGGCTACAGCCGTGAGGAGTTGCTGGGCGCGCCGCATA ACCTGTTGCGCCACCCGGACATGCCCTCCGCGGCCTTCGCCCACATGTGGCGCACCCTCAAGCGCGGCCGTTCGTGGATG GGCATGGTGAAGAACCGTTGCAAGAACGGCGATCACTATTGGGTCAGTGCCTATGTCACGCCCGTGACCCGCGATGGCCA GGCGGTGGAATACCAGTCGGTGCGCACCAAACCCAGCGTCCGTCAGATCGAGGCGGCGGAGCGGGCCTATGCCCAGCTCA ACGGTGCCGGCCCCTCGTGGTGGAGCCTGTTGCCGGTGATCAGCCTGCGGTTGCGTCTCTGGGCCTCCATCAGCGCCGGC TTCATCGGCAGCTACGGCGTTTCAGTGTGGCTGCTGCCCGAATCCTGGATGGTCCAGGGGGCCGTGATGGCCATGGGGTG GTGCCTGAGCCTGACGGCGGTCGGCGTGCAAGCGCGTCCACTGGATCGATTGGCCGAGCGCGCCCGGCAGATCGGTGACA ACCCCTTGAGCCAGGGCATCTATACCGGCCGTACCGACGAGTTCGGGCGCATCGAGTTCGCCCTGCAGATGCTCGAAGCC CAGGTAGGCGCGGTAGTGGGGCGCATCGGCGATGCGTCCCAGCGCCTGGAGGGGCATGCCGCGGAACTGGTGGAGCATCT GCACAGCAGCCACAACAGCACCCTGGAACAGCAGGCGGAAACCGATCAGGTGGCGGCGGCCATTCACCAGATGGCGGCCA GCGTCGCCGAGGTCGCCACCCATGCCCAGCAGGCCTCGGTGGCGGCGGACCAGGCGGAAAGCGAAACCCGTGAGGGCCAC CTGCTGGTGGGCGAAAGCCGCAGTGCGGTGCTGCGCCTGGCCAGCGAGCTGGAGCGGGCCACCGAGGTCATCCATCAACT GGAAAGCCATAGCACCGACATTTCCGGGGTGCTGGAGGTGATCCGCAGCATCGCCGAGCAGACCAACCTGCTGGCCCTGA ATGCGGCAATCGAGGCGGCGCGGGCCGGGGAGCAGGGCCGGGGTTTTGCCGTGGTCGCCGATGAAGTGCGCGGGCTGGCC CAGCGTACCCAGGATTCCACCAACGAGATCCAGCGCATGATCAGCACCCTGCAAATGGGCGCGCGCAATGCGGTGGAGGC CATGCAGCACAGCAGCCAGCACCTGGAGAGCAGTGTCGACCAGGCCAAGCGCGCGGCGGTGGCCCTGGACGGCATCAGCC AGCGGGTCAACCAGATTACCGAGATGAGCTTGCAGATCGCCGCAGCGGTGGAAGAGCAGAGCGCAGTCAGCGAGGACATC AACCGCAACATCATCGGCATTCGCAATGCCTGTGAGGCGACCGTCAGTGCCGGCCAGCTCAGCCACGTCAACTCAGGCGA CGTGGCCGGGCTGGCGGGGGACTTGCGGCAACTGGCCCTGGAGTTCTGGCACAAGCGCGGCTAG Protein sequence : MKINLPVTGRNVDFAPDANILSTTDLTSAITYANPDFIKISGYSREELLGAPHNLLRHPDMPSAAFAHMWRTLKRGRSWM GMVKNRCKNGDHYWVSAYVTPVTRDGQAVEYQSVRTKPSVRQIEAAERAYAQLNGAGPSWWSLLPVISLRLRLWASISAG FIGSYGVSVWLLPESWMVQGAVMAMGWCLSLTAVGVQARPLDRLAERARQIGDNPLSQGIYTGRTDEFGRIEFALQMLEA QVGAVVGRIGDASQRLEGHAAELVEHLHSSHNSTLEQQAETDQVAAAIHQMAASVAEVATHAQQASVAADQAESETREGH LLVGESRSAVLRLASELERATEVIHQLESHSTDISGVLEVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRGLA QRTQDSTNEIQRMISTLQMGARNAVEAMQHSSQHLESSVDQAKRAAVALDGISQRVNQITEMSLQIAAAVEEQSAVSEDI NRNIIGIRNACEATVSAGQLSHVNSGDVAGLAGDLRQLALEFWHKRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0512 | NP_230163.1 | methyl-accepting chemotaxis protein | Not tested | VSP-2 | Protein | 1e-111 | 54 |
