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Name : PFL_4977 (PFL_4977) Accession : YP_262056.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : phage integrase family site-specific recombinase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 5728657 - 5729898 bp Length : 1242 bp Strand : + Note : identified by match to protein family HMM PF00589 DNA sequence : ATGAAGCGCGCAGATATCAAGCGCCGCCCTCTCGCAGACACGACACTTACAGGGCTAGAACCTGAAGCAAAGGAGTATCG CGAGCTGGACGGAAACGGCCTGTACTTCAGGGTCAAGCCTGATGGTGGCAAATCCTGGCAGCTCCGTTACAAACGCCCTG CGGGCAATTGGGCCTGGATGGGGCTAGGGGGTTACCCCGAGGTGAGCGGTGCATTGGCCCGGGAAAAAGCTGCCGAACTG CGCAAGACCATAAGCAGCGGAATTGATCCCCTTGAGCAAAAGCGGTCTGCCAAGGCCGCAATAGATGCAGCCAAGACACG AACCTTCAGAGCAGCTGCTGACGCTTGGCTAAAGGCAAAAGAAGAAAAGGGACTGGCTCCCTCAACGCTCAACAAAATCC GCACCTACCTCGACAAGGACATTCTCCCGGCATTGGGGGACAAACCGCTCGACGAAATCACCCGTACCGATTGCGCCGAA CTCCAAGCATCCATCGAAGCCCGAGATGCCCACAACGTAGCGGAAAAGTGCCGCACCTGGATCAACCAGATATTTGGACG GGCTATCGGGTTAGGGCTCACCGAGAACGACCCGGGGAGCCGGCTTCGGGATATAGCTGCCCAAGCGCCAAAAACTCAAC AGCACCCGCATCTACTAGAACCCGAGCTAGGCGAGTTCCTCACCGCACTTAAAAACACCCCCAGCAGACTGACGGCACGA ACAGCAGCATGGCTTTGCATCTGGACAGCCTCACGACCTGGCATGGTTCGCCTAGCTGAATGGAAAGAGTTCGACCTCGA TAAGGCCACTTGGACGACACCAGCGGCAAAGATGAAGATGCGCCGAGACTTCGTTTGCCCTCTCCCCCATCAAGCCATTG CCGCCCTAAAGGAACTCCATTGCCTGACTGGCCGCAGTCGCTGGCTGTTCCCCGGAGTGGGCGCCAAGAACCCGACCATC AGTGAAAACACGATCAACAAAGTCTTCGCTACCATCGGGTATAAAGGCCGCCTTGTGGGTCACGGTACCCGGCACACAGC AAGCACGCTGCTGCGAGAACATGGTTGGCCCAAGGAGCACGTTGAGGCACAACTGGCCCACAAGGAGGAAGGAATCTCAG GGGTCTACAACAAGGCTCAGTATCTCGAACAGCGCATAACAATGATGCAGTGGTACGCCGATCACTTGGACGCCCTGGAG CAGGGGAAAGTGATTCAAGGTCAATTCGGTAAAGCACTATGA Protein sequence : MKRADIKRRPLADTTLTGLEPEAKEYRELDGNGLYFRVKPDGGKSWQLRYKRPAGNWAWMGLGGYPEVSGALAREKAAEL RKTISSGIDPLEQKRSAKAAIDAAKTRTFRAAADAWLKAKEEKGLAPSTLNKIRTYLDKDILPALGDKPLDEITRTDCAE LQASIEARDAHNVAEKCRTWINQIFGRAIGLGLTENDPGSRLRDIAAQAPKTQQHPHLLEPELGEFLTALKNTPSRLTAR TAAWLCIWTASRPGMVRLAEWKEFDLDKATWTTPAAKMKMRRDFVCPLPHQAIAALKELHCLTGRSRWLFPGVGAKNPTI SENTINKVFATIGYKGRLVGHGTRHTASTLLREHGWPKEHVEAQLAHKEEGISGVYNKAQYLEQRITMMQWYADHLDALE QGKVIQGQFGKAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAT96071.1 | site-specific recombinase | Not tested | T-PAI | Protein | 9e-178 | 88 |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 5e-57 | 41 |
| BJAB0715_01002 | YP_008216150.1 | Integrase | Not tested | AbaR27 | Protein | 4e-74 | 41 |
