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Name : treC (PFL_4933) Accession : YP_262013.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : alpha,alpha-phosphotrehalase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0366 EC number : 3.2.1.93 Position : 5684539 - 5686188 bp Length : 1650 bp Strand : - Note : identified by similarity to SP:P39795; match to protein family HMM PF00128; match to protein family HMM TIGR02403 DNA sequence : ATGCAAGACTGGCAGCGTTCGGTGATCTACCAGATCTACCCGAAAAGTTTTCACAGCCACCAAGGGCAGGCCACCGGCGA CCTGCTGGGAGTGGTAGACAAGCTCGACTACCTGCACTGGCTGGGGGTCGATTGCCTGTGGTTGACCCCGTTCCTGCGTT CGCCGCAACGCGACAACGGCTATGACATCAGCGACTACTACGCCATCGATCCCAGCTACGGCAGCATGGCCGACTGCGAG TTGCTGATCGCCGAGGCCGGCAAGCGCGGGATCAAGCTGATGCTGGACATCGTGGTCAACCACACCTCCATCGAGCACGC CTGGTTCCAGCAGGCGCGCAGCAGCCTGGACAACCCCTACCGGGATTTCTACATCTGGCGCGATGAGCCCAACAACTGGG AGTCCAAGTTCGGCGGCTCGGCCTGGGAATACGAAGCGCAGACCGGGCAGTACTACCTGCACCTGTTCGATCACACCCAG GCCGACCTCAACTGGGACAACCCCCAGGTGCGTGCCGAAGTCTTCAAGATGATGCGCTTCTGGCGGGACAAGGGCGTCGG CGGCTTTCGCCTCGACGTGATCAACCTCATCTCCAAGCCTGCGGACTTCCCTGAGGACCAGAGCGATGGCCGGCGCTTCT ATACCGATGGCCCGAACGTTCATGAGTACTTGCAGGAAATGCATCGGGAAGTGTTCGCCGGCCATGACCTGGTGAATGTC GGCGAGATGTCGTCCACCCGCCTGGAACACTGCATCCGCTACTCGAACCCGGGGTCGAAGGAGCTGTCCATGACCTTCAA CTTCCATCACCTGAAGGTGGATTACCCCAATCAGCAGAAGTGGTTGCGGGCCGATTTCGACTTCCTTGAACTCAAGCGCA TCCTGTCCGACTGGCAGTGCGGCATGCAGGCCGGTGGCGGCTGGAATGCGCTGTTCTGGTGTAACCACGACCAGCCCCGG GTGGTCTCGCGCTTTGGCGACGACGGCGAACACCGTGTGGTGTCGGCGAAGATGCTGGCCACCGCATTGCACCTGCTGCA GGGCACGCCCTTTGTCTATCAGGGCGAAGAGCTGGGCATGACCAATCCGCATTTCCAGCGCATCGAGCAGTATCGCGACG TCGAGACCCTGAACATCTACCGCCTCAAGCGCGAGGCCGGTGAAGAGCCGCAGGCCATCATGGCGGCGATCCAGCAGAAA TCCCGGGACAACGGGCGTACGCCAATGCAGTGGAATGCCGGGGCCAATGCCGGTTTCAGCAGCGGCACCCCCTGGATCGA GGTTGCGGCCAACGCTGGCCAGATCAATGTCCAGGCACAGCTCGACGACCCGCAATCAGTGCTGCACCACTATCGCCAAT TGATCGCGTTGCGCCGTGAGCAGGGTTTGATCCAGCACGGCGTCTATCGCCAATTGCTGCCCGAGCATCCGCAGGTCTGG GCCTACGTGCGGGAAGGGCAGGGCGAGCGACTGCTGGTGGTGAACAACTTCTACGGTTCGCCGTGCGAGGTTGAATTGCC GCAGGAGGTCGTCGAGCCGGGCATGCAGCAGCGTCTGCTGATCAGCAACTACCCGGGGGATGGCGCCCGCAGCCGGCATT TGCGGCTGCGGCCCTATGAGTCCTTCGTCCTGCACCTGACCGACTGCTGA Protein sequence : MQDWQRSVIYQIYPKSFHSHQGQATGDLLGVVDKLDYLHWLGVDCLWLTPFLRSPQRDNGYDISDYYAIDPSYGSMADCE LLIAEAGKRGIKLMLDIVVNHTSIEHAWFQQARSSLDNPYRDFYIWRDEPNNWESKFGGSAWEYEAQTGQYYLHLFDHTQ ADLNWDNPQVRAEVFKMMRFWRDKGVGGFRLDVINLISKPADFPEDQSDGRRFYTDGPNVHEYLQEMHREVFAGHDLVNV GEMSSTRLEHCIRYSNPGSKELSMTFNFHHLKVDYPNQQKWLRADFDFLELKRILSDWQCGMQAGGGWNALFWCNHDQPR VVSRFGDDGEHRVVSAKMLATALHLLQGTPFVYQGEELGMTNPHFQRIEQYRDVETLNIYRLKREAGEEPQAIMAAIQQK SRDNGRTPMQWNAGANAGFSSGTPWIEVAANAGQINVQAQLDDPQSVLHHYRQLIALRREQGLIQHGVYRQLLPEHPQVW AYVREGQGERLLVVNNFYGSPCEVELPQEVVEPGMQQRLLISNYPGDGARSRHLRLRPYESFVLHLTDC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| malL | YP_251987.1 | oligosaccharide alpha-1,6-glucosidase | Not tested | SCCmec | Protein | 8e-125 | 47 |
