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Name : PFL_4752 (PFL_4752) Accession : YP_261834.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : phage integrase family site-specific recombinase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4973 EC number : - Position : 5491834 - 5493171 bp Length : 1338 bp Strand : + Note : identified by match to protein family HMM PF00589 DNA sequence : ATGACTCCGGTTGCGCTGCTACAAGAATACCTAATGGATCATGTATTGCGCGATGCAAGTATTAAGATCTATCGATCAGC TATGAAGGCGCTTACTAAAAATTTTGGTAAAGAGGTAGATATAACAACTCTTGACCGAAGAAAGATCCTTGCCTGGAGAA ATAATGTTGTCGAGGGTGGGCTCTCTAGGCGAAGTTGGAATACATACTCTAATCATCTGCGCACTATTTGGACCTATGCG CTTGAGTACGAAATCATACCCAGTTCGCTAACCAACCCTTTCAAGAAAAGCACGCTCATTGCACCGAAGCGTCCAAGCAA GATCATCTCGGGAGACGGGATACGCCAGGCTCGTCATTGGTTGCAATCCCTAGTCGACCAGGAGAAGAGCTCTGGTACGC GCAGCCCGATAACGCCTGCGTGGTTCTGGCTGGCCACATTCGAGATGTTCTATTACACCGGGATACGCCTGAATGCACTG CTGTGCATTAGGGTTCAAGACGTGGACTGGGACAATAGACTCGTTTACGTGAATGCTGATACAGAAAAGACTCACAGAGA GTTTTGCGTTCCCATAATGAAGGGTTTGGAACCACACATACAAAAACTTTTGAACGCTGCTTCATCCCAAGGCTTTTCGG GCCAAGATCAGCTCTTCAATGTTAATCGGTTTTCGATCCACTACAGATCTAAAATCATGAACATTGATCAAGTGGAGGGT ATGTACAAAAAACTGACTAGCGCCTTCGGTATACGCATGACGCCGCACCGGTTCAGACACACCCTCGCTACCGATTTGAT GCGGCAACCAGAACGCAATATTCACCTGACCAAAACACTGTTAAACCATTCGAACATAGCCACGACGATGAGTTACATCG AGGCTGACTACGAACATATGCGGGCAGTGCTCGACGAGCGTAGCTGGCATCAGGGCGCGATAAGACTTGAGCGACGTGAG GACGTCATACCTCCTCAGGGACTTGAGCCAAAGCCTGAACCTCTGCCCGAACAATTACCGGCCCTGGCGAAGCCGCCAGA GAGGCTTGAGGAATGTCCCGCCGCAACAGCGGAGGACTCACCCACCCAGCATGCCGCAACGGCCTCCGAGCTGCTGGCAG CACTGCCCAGGCAGAAACGGCCTGAAAAATATCCGCTGGAACAAGTATCCAAGCCCTGCACAGGGCTTTCTCATGAGCTG AGTTGGGACGGACCTGGAACGCTCTGGGCGGATCTAGGTATACCGCCTTGCCAGTCGATGGAGGATTCGCTTGAGCCAGC AGCTCTGATGGATCTTTTACCGGACAGAAGCGCCATCGGCAGCTTCCGGTGGAATTGA Protein sequence : MTPVALLQEYLMDHVLRDASIKIYRSAMKALTKNFGKEVDITTLDRRKILAWRNNVVEGGLSRRSWNTYSNHLRTIWTYA LEYEIIPSSLTNPFKKSTLIAPKRPSKIISGDGIRQARHWLQSLVDQEKSSGTRSPITPAWFWLATFEMFYYTGIRLNAL LCIRVQDVDWDNRLVYVNADTEKTHREFCVPIMKGLEPHIQKLLNAASSQGFSGQDQLFNVNRFSIHYRSKIMNIDQVEG MYKKLTSAFGIRMTPHRFRHTLATDLMRQPERNIHLTKTLLNHSNIATTMSYIEADYEHMRAVLDERSWHQGAIRLERRE DVIPPQGLEPKPEPLPEQLPALAKPPERLEECPAATAEDSPTQHAATASELLAALPRQKRPEKYPLEQVSKPCTGLSHEL SWDGPGTLWADLGIPPCQSMEDSLEPAALMDLLPDRSAIGSFRWN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| xerC | AAP82947.1 | integrase | Not tested | PAPI-2 | Protein | 9e-105 | 63 |
| unnamed | ABR13342.1 | tyrosine recombinase xerC-like protein | Not tested | PAGI-5 | Protein | 2e-104 | 63 |
| int | ABD94670.1 | putative integrase | Not tested | ExoU island A | Protein | 5e-105 | 63 |
| xerC | AAP84129.1 | integrase | Not tested | PAPI-1 | Protein | 1e-103 | 62 |
