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Name : traI (PFL_4751) Accession : YP_261833.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : integrating conjugative element relaxase Function : - COG functional category : R : General function prediction only COG ID : COG3481 EC number : - Position : 5489951 - 5491837 bp Length : 1887 bp Strand : + Note : identified by match to protein family HMM PF07514; match to protein family HMM PF07515; match to protein family HMM TIGR03760 DNA sequence : ATGCAAATTCTTTCCTGGCTCAGCCGAAAACCGGCTAGGCCACCCTCAGAAGCAACTGCGCAAGGCTTCCACCTACCGGT AAACGCAGCTGCGCTGCTGAACACTCCCCGACGCCAAGAGCTTCTGGAGAACATCTGGCGCCGGGCTTCGCTCTCACATC AACAGTTCAACACGCTCTACCGCCAGCCGCTTGAGCGGTACGCAGAGCTGGTACAGCTGATGCCGGCTTCAGAAAATCAT CACCACGCCCATCTAGGCGGCCTGCTCGATCATGGGCTGGAGATCGTGGCTTACGCTTTGAAGATCCGTCAAACCTACCT TCTACCGATCGGCGCCCCACCTGAGTCGCAATCAGCCCAAGCTGAAGCTTGGACAACAGCGGCAGCCTATGGGGCATTGC TACATGACCTTGGCAAAGTAGCAGTCGATATTCGAGTCGAGCTTCAAGGTGGACAGATCTGGCACCCATGGCATGGGCCA ATCGCAAAGCCCTATCGATTCAAGTACATCAAAGGTCGTGAGTATCAGCTCCACGGAGCAGCTACTGCTTTGATCTATTC GCAGATCCTGGCCCCTGAGATTCTAGATTGGCTCTGCGGGTTTCCTGAACTTTGGACGGAATTGATCTACCTGGTCGCAG GGCAGTTCGAAAATGCCGGCATTTTAGGTGAGATTGTAATCAAGGCTGATAGTGCATCGGTGGCCCAGGAGCTCGGAGGC AATCCAGACCGTGCGATGGCAGCACCCAAACAATCGCTTCAAAGGCAACTGGTGGAGTGTCTCAGGTACCTGGTGCGAGA GAAGTTCAAGCTCAACCACCCCGACGGTCCTGCTGACGGTTGGCTGGCCCAGGATGCTCTTTGGCTGGTAAGCAAGCCGA CTGCGGACCACCTGAGGGCGGCAATGCTCTCGCAGGGCAGCGACAACATTCCGTCCTCCAATGCGCCTTTCTTCAACATG CTGCAGGACCAGGCCATTATTCAGACGAATGCCAAGGATAAAGCTGTTTGGAAGGTAACCGTCGATACAGGGCACGGTTG GAAGCACAGCTTTACGGTACTGAAAGTCACTCCTTCGCTAATCTGGGCTGATCCAGCTGATCGTCCTGAGGCTTATGCAG GCACCGTCACGGTCGAAGTCGACCAAGACGGTTCAGAAGCTCTTCAGGAGACAACATGCGCTGTTCCAGACGAGCCGATT ACAGCAGAACCGAATGTTCCCGCCGTGGGAGTTAATCCAATCGTTGCTCCCCCAAAAAATCAAAAACAAACTCAGACCTT GCAGAACATCGATTCGGAAAACTCCGATATCGATGAACTGTTGAAACTCTATAGTAACATCACGGTGCCAGCAGAGGGAC TAAGCTCCAGCGCTGGCCCGGGGGCTGCATCGCCCCTTCAATCAGGGATGACGCAGCCTGAGTACACTTCTGAGGCCAGT GCTGAGCCTCAAGCACTAGAAGATGTAACCACAATGCCTTCCAGTATCAGTCTGGGACAGGGATTCGTCGCGTGGCTAAA GGCCGGAATCACCTCCCGAAAAATCATCATCAATGATGCCAAAGCGCTGGTTCATACCGTTGACGGCACAGCAATGCTCG TTACTCCAGGTATCTTCAAGCGCTATATACAAGAGCATCCGACCCTTGAGCAGATCGCAACAAAGAACGGGACGGTTGCC TGGCAGCAAGTTCAGCGTGCGTTCGAGAAGGAAAAGCTGCATGAGAAAACGAAGAAGAGTTTGAATATCTGGACTTTTAA CGTTTCAGGCCCAAGGAAAACCAAACAACTTAAAGGCTATTTACTAAGAGACCCCAGCACTATCTTCACAGAAGTTGCTT TGGACAACCCTAGCATCTCTAGAGTGGAAGAAGGGGTTAGCCTATGA Protein sequence : MQILSWLSRKPARPPSEATAQGFHLPVNAAALLNTPRRQELLENIWRRASLSHQQFNTLYRQPLERYAELVQLMPASENH HHAHLGGLLDHGLEIVAYALKIRQTYLLPIGAPPESQSAQAEAWTTAAAYGALLHDLGKVAVDIRVELQGGQIWHPWHGP IAKPYRFKYIKGREYQLHGAATALIYSQILAPEILDWLCGFPELWTELIYLVAGQFENAGILGEIVIKADSASVAQELGG NPDRAMAAPKQSLQRQLVECLRYLVREKFKLNHPDGPADGWLAQDALWLVSKPTADHLRAAMLSQGSDNIPSSNAPFFNM LQDQAIIQTNAKDKAVWKVTVDTGHGWKHSFTVLKVTPSLIWADPADRPEAYAGTVTVEVDQDGSEALQETTCAVPDEPI TAEPNVPAVGVNPIVAPPKNQKQTQTLQNIDSENSDIDELLKLYSNITVPAEGLSSSAGPGAASPLQSGMTQPEYTSEAS AEPQALEDVTTMPSSISLGQGFVAWLKAGITSRKIIINDAKALVHTVDGTAMLVTPGIFKRYIQEHPTLEQIATKNGTVA WQQVQRAFEKEKLHEKTKKSLNIWTFNVSGPRKTKQLKGYLLRDPSTIFTEVALDNPSISRVEEGVSL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13343.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 3e-178 | 61 |
| RL003 | AAP84130.1 | pathogenesis-related protein | Not tested | PAPI-1 | Protein | 4e-177 | 61 |
| EXA2 | ABD94612.1 | conserved hypothetical protein | Not tested | ExoU island A | Protein | 2e-176 | 60 |
| pph99 | CAI36140.1 | predicted HD-superfamily hydrolase | Not tested | PPHGI-1 | Protein | 2e-139 | 55 |
| ORF C36 | AAN62129.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 2e-138 | 51 |
| ORF SG44 | AAN62266.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 4e-136 | 50 |
