Gene Information

Name : PFL_4710 (PFL_4710)
Accession : YP_261793.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Unknown
Product : integrating conjugative element protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5442113 - 5443051 bp
Length : 939 bp
Strand : +
Note : identified by similarity to GB:AAP94687.1; match to protein family HMM PF07513; match to protein family HMM TIGR03756

DNA sequence :
ATGAGATCTCGCACCTTGGCATTCGCGCTGACTGCGCTCACTTCATTTTCAGCATCGGCCGCAATCAACACGGCAGCAAT
CGTGGGGTCTACAGCCTCCCCGACCTGCCTTGATTACCGGGTTGTTGGGATCTGTTACTGGCTCCTTTGCACGCCATTCG
GATGCAAGATCAAAACTTCAACGAAGGTACGCCACTACGTGCCCGACGCCGTTGTCTCGGCATACGCCAATACTGGCGAA
AACCCATGGGTGGAAGTCAGCCCGATGGGGAGGCCGAATTCCACCGCGCAAGCTGGGAACAACGGAACAACGAATCACAA
CGCCGAAAACAACATCTCGAAGTTCAAAAACGCTGACGTAATCGGGCACCCAGGTGGGGCTGTTTTCAGCAAGTTTGCAG
CCGCTTCTGGCTACGCATGCCCAGGCGCCACCCTCCCCTTCGTTCCGTACATGCTCAGTACCCTCGATACCCTTGCATGG
CGCCACGGAATCCCCGAAGTCGTCTATCCAGAGTCCCTGATGCCTGGTCTGAGGGAAGTTGGCGGCCTTCTATCAACGAA
TATGTGGGGAAGCATCTATCCGCGCAGCGGATTCATTCACCAGAGCGACGACTTCAAGGCAGCAGCGGTGATCGCTCAAC
GTGCCGGCGATATCACAACCCGTTTGGGCCAACCGCACGTCTACGTGCCAATGCGGACCTTCCCAATGCCTGGCTACTGG
CCTGCCGGCGAACTCCTCGAGGACGACTACTCGACCGGAAAGTGGCAGCAGCTCACACCTTCCCTGAGCCCAACTTGCGC
AACATTTCCTACCAGCGGGTGGGGAATAGGCACCGATATGGAAGCGGCCAACGGAGCCTATGCCTGGGCCCTCTGGCGCC
CCTACTCGTGCTGCCAACGGCGCGGGCAGATTTTCCTCGGCAGCACTGACTTTCAATAA

Protein sequence :
MRSRTLAFALTALTSFSASAAINTAAIVGSTASPTCLDYRVVGICYWLLCTPFGCKIKTSTKVRHYVPDAVVSAYANTGE
NPWVEVSPMGRPNSTAQAGNNGTTNHNAENNISKFKNADVIGHPGGAVFSKFAAASGYACPGATLPFVPYMLSTLDTLAW
RHGIPEVVYPESLMPGLREVGGLLSTNMWGSIYPRSGFIHQSDDFKAAAVIAQRAGDITTRLGQPHVYVPMRTFPMPGYW
PAGELLEDDYSTGKWQQLTPSLSPTCATFPTSGWGIGTDMEAANGAYAWALWRPYSCCQRRGQIFLGSTDFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13357.1 hypothetical protein Not tested PAGI-5 Protein 2e-97 74
EXA20 ABD94629.1 conserved hypothetical protein Not tested ExoU island A Protein 1e-97 74
RL017 AAP84144.1 conserved hypothetical protein Not tested PAPI-1 Protein 2e-95 73
pph89 CAI36130.1 hypothetical protein Not tested PPHGI-1 Protein 4e-96 71
ORF C43 AAN62136.1 hypothetical protein Not tested PAGI-2(C) Protein 3e-88 66
ORF SG51 AAN62273.1 hypothetical protein Not tested PAGI-3(SG) Protein 3e-87 65
STY4576 NP_458661.1 hypothetical protein Not tested SPI-7 Protein 4e-70 49
t4273 NP_807871.1 hypothetical protein Not tested SPI-7 Protein 4e-70 49
YpsIP31758_3701 YP_001402655.1 hypothetical protein Not tested YAPI Protein 6e-67 49
api54 CAF28528.1 conserved hypothetical protein Not tested YAPI Protein 2e-66 49
Pmu_02990 YP_005176198.1 integrating conjugative element protein, PFL family Not tested ICEPmu1 Protein 3e-61 47
YE3467 YP_001007628.1 hypothetical protein Not tested YAPI Protein 1e-60 47
unnamed AAX39458.1 unknown Not tested Hrp PAI Protein 2e-53 46
PMI2573 YP_002152292.1 hypothetical protein Not tested Not named Protein 2e-58 46