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Name : PFL_4706 (PFL_4706) Accession : YP_261789.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : conjugative transfer ATPase Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3451 EC number : - Position : 5435245 - 5438169 bp Length : 2925 bp Strand : + Note : identified by match to protein family HMM TIGR03744 DNA sequence : ATGGGACTCTTCGAGCGCCTACGCGACAAACTCAACCTTGCGGTTGAGTCTGATGAACAACTCACAAGTGAACCTATTCA CCTTGATCTCGAACAAGCCCGGGAGCGCTACCTGAAGCGCCTGCAGGCGCTGGGAATCCCCACTCCAAGTGAAGGGTCGC AACCAGCCAAAAAGAGCGATGTATCGAAGCTGTACGAAGTTGCTCCGTCGATTGTGGACCTATTGCCCTGGGTCGAATAC TTACCTGAGGAGCAGGCCATGCTGCTCGAGGACGGGGTATCGCGCGCGGCATTCTTTGAACTTGTACCGATCGGGACCGA GGGTCGAGAAGCCGAATGGCTACATCTAGCCAGGGACGCACTTGAAAATGCTCTGCAGGACAGCTTGGATGAGCTGGAAA GCTCGCCCTGGGTGCTCCAACTCTATGCTCAAGACGAAACACGCTGGGACGAGTACCGGGAAAATTTGAACAAGTACGTA CATCCTCGAGTGAAAGATAGTGAGTTCACCAAGCTCTACCTGGCCCTCTTTCAGCGTCACCTGGACGCGATTTCGAAACC TGGTGGACTTTTCGAAGATACGACAGTCAGCAAGCTGCCATGGCGCGGTCAGAATCGTAAGGTTCGCCTGGTCGTGTATC GTCGGGTGAAAAAACAAGATCTCAACGTGCGCGGCCAAGATCCTGGCTCCTACCTGAAACTGATCTGCGAGCGACTCATT GGCGCTCTGGCAAATGCCGGCGTCGTTGCAAAGCGACTGGACGAAATGGGAATCCAAAATTGGTTGATCCGTTGGTTCAA TCCATACCCCGACCATTTAGGCGATAGTGACCAGGACATTCGCCGGTTCTACGAACAAGTATGTGAGCCGCCCCGAGACC TCGAGGCCGGTGAGCTTCCTTTAGCCAGCGGCACTGATTTTTCGCAGAACCTTTTTTTCAGAGAGCCGCTGTCAGACGTT GATAAAGGCCTGTGGGTTTTCGATGGAAGACCACATCGAGTAGTGATGCTCGACCGGTTGAAGAACCCGCCTAAGACCGG TCATCTAACGGGTGAAATTAGACAAGCAGATGCGCTCAATGCCCTATTTGACCGTCTACCTGAGAACACAACACTTTGCA TCACCATGGTGCCGACACCCCAGGACCTTCTCGAGGGGCACCTCGAGAAGCTATCAAAGAAAGCCGTTGGTGATACACAG GCCTCCCTGCACACACGGCAAGACGTTGAAACTGCTCGCACCATCCTTGGTCGCAAGCACAAACTTTATCGCGCCAGCGT GGCCTTCTTTCTGAGCGGCAAAGACAGAGTAGAGCTGGATCAGCGATCAACTCAGCTCTGTAACGTACTGCAAGCTGCTG GAATGCACCCCGTGATGCCGCAAGATGAAGTCGCACCTCTTAACAGCTATCTGCGCTGGTTGCCTTGCAACTTCGATCCG AACGAACGTCGAGCCATGGACTGGTACGCCCAGCTAATGTTCGTCCAGCATATTGCGAATCTGGCCCCCATCTGGGGCCG CTCGACAGGAACCGGCCACCCTGGATTCACATTTTTCAACCGCGGCGGTTCGCCTCTCACTTTCGATCCTTTTAACCGGC TTGACCGGCAGATGAACGCCCATGGCTTTATTTTCGGCCCAACCGGATCAGGTAAATCCGCATCCCTTACAAACGTGATC TGCCAGATGCTTGCGATTTACGGTCCTCGGATGTACGTCGCCGAGGCCGGTAACAGCTTCGGTTTACTGGCACAGTTCGC ACAAAACTTGGGGCTGTCGGTTCATAGAGTGCGCTTAGCGCCAGGTTCCGGCGTGAGTCTTGCCCCGTTCGCAGATGCCA TCAAACTGGTCCAGACCCCAAACTTGGTCAAAGTCCTCGATGCGGACGACATCGAGGCCTCCGACGCCACTTCACAGCGC CCAGATATGGAAGATGAGCAGCGGGACATCCTCGGCGAAATGGAGATCATTGCTCGTTTAATGATCACTGGCGGCGAGGA AAAAGAAGATGAACGCATGACCAGGGCCGACCGAAGCGCCATCCGACAAGCAATTCTTGCCGCTGCCAATACCTGCATGA AGGCGGGGCGCGTGGTGTTGACCCAGGATGTGCGTGATGCCCTGTACGAGGCCTCTCGTAACGAAGGAACCCCCGAAACT AGGCGAAACCGGCTTTCGGAAATGGCTGAGGCGATGGATATGTTCACCATGGGTGCGGACGGAGAGATGTTCAACCGCGA AGGCACCCCATGGCCTGAAGCGGACCTGACTGTCGTTGATTTCGCAACCTACGCTCGCGAAGGCTATGCGGCCCAGCTTG CGATCGCTTACATCTCAATGCTCAACACCGTGAACAACATTGCCGAACGCGATCAGTACAAAGGGCGCCCGATCGTCAAA ATCACTGACGAAGGCCACATCATCACTAAGCATCCCCTATTGCTCCCCTATGCCATGAAGATCACGAAAATGTGGCGAAA GCTCGGTGCTTGGTTCTGGCTAGCAACACAAAACATCGATGACATCCCAGCCTCCGGTGCCCCTATGCTCAACATGATTG AGTGGTGGATGTGCCTCAACATGCCGCCCGATGAGGTCGAGAAAATTGCAAATTTCCGCGAGCTCACGTCAGCACAGAAA AAAATGATCCTTTCTGCAAGTAAGGAGAGCGGGAAATTCACCGAAGGTGTGCTTCTGGGCAAAGGCAAAGAGTTCCTCTT CCGTGTTGTACCACCGAGCCTGTATCTCGCCCTTGCCATGACCGAAAGTGAAGAAAAGGCCCAGCGCTTCAAGATCATGC AAGAGCAGGGATGCGATGAGCTTCATGCAGCACTTCAAGTAGCCGCGGATCTCGATCGGCAGCGCGGTATCGCATCGTTC CCCATCAAATTTCCTGAAAACAAGGCCATGGAGCATCAGGCATGA Protein sequence : MGLFERLRDKLNLAVESDEQLTSEPIHLDLEQARERYLKRLQALGIPTPSEGSQPAKKSDVSKLYEVAPSIVDLLPWVEY LPEEQAMLLEDGVSRAAFFELVPIGTEGREAEWLHLARDALENALQDSLDELESSPWVLQLYAQDETRWDEYRENLNKYV HPRVKDSEFTKLYLALFQRHLDAISKPGGLFEDTTVSKLPWRGQNRKVRLVVYRRVKKQDLNVRGQDPGSYLKLICERLI GALANAGVVAKRLDEMGIQNWLIRWFNPYPDHLGDSDQDIRRFYEQVCEPPRDLEAGELPLASGTDFSQNLFFREPLSDV DKGLWVFDGRPHRVVMLDRLKNPPKTGHLTGEIRQADALNALFDRLPENTTLCITMVPTPQDLLEGHLEKLSKKAVGDTQ ASLHTRQDVETARTILGRKHKLYRASVAFFLSGKDRVELDQRSTQLCNVLQAAGMHPVMPQDEVAPLNSYLRWLPCNFDP NERRAMDWYAQLMFVQHIANLAPIWGRSTGTGHPGFTFFNRGGSPLTFDPFNRLDRQMNAHGFIFGPTGSGKSASLTNVI CQMLAIYGPRMYVAEAGNSFGLLAQFAQNLGLSVHRVRLAPGSGVSLAPFADAIKLVQTPNLVKVLDADDIEASDATSQR PDMEDEQRDILGEMEIIARLMITGGEEKEDERMTRADRSAIRQAILAAANTCMKAGRVVLTQDVRDALYEASRNEGTPET RRNRLSEMAEAMDMFTMGADGEMFNREGTPWPEADLTVVDFATYAREGYAAQLAIAYISMLNTVNNIAERDQYKGRPIVK ITDEGHIITKHPLLLPYAMKITKMWRKLGAWFWLATQNIDDIPASGAPMLNMIEWWMCLNMPPDEVEKIANFRELTSAQK KMILSASKESGKFTEGVLLGKGKEFLFRVVPPSLYLALAMTESEEKAQRFKIMQEQGCDELHAALQVAADLDRQRGIASF PIKFPENKAMEHQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13362.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 74 |
| EXA33 | ABD94642.1 | conserved hypothetical protein | Not tested | ExoU island A | Protein | 0.0 | 72 |
| RL022 | AAP84149.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 72 |
| virB4 | CAI36125.1 | VirB4 component | Not tested | PPHGI-1 | Protein | 0.0 | 64 |
| ORF SG57 | AAN62279.1 | hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 63 |
| ORF C47 | AAN62141.1 | hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 63 |
| YE3482 | YP_001007641.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 50 |
| STY4573 | NP_458658.1 | hypothetical protein | Not tested | SPI-7 | Protein | 6e-180 | 50 |
| YpsIP31758_3705 | YP_001402659.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 50 |
| api39 | CAF28513.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 50 |
| PMI2576 | YP_002152295.1 | hypothetical protein | Not tested | Not named | Protein | 0.0 | 49 |
| Pmu_03070 | YP_005176206.1 | conjugative transfer ATPase TraC-like, PFL family | Not tested | ICEPmu1 | Protein | 0.0 | 49 |
