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Name : PFL_6233 (PFL_6233) Accession : YP_004842369.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : conjugative transfer region lipoprotein Function : - COG functional category : - COG ID : - EC number : - Position : 5434806 - 5435243 bp Length : 438 bp Strand : + Note : identified by match to protein family HMM TIGR03751 DNA sequence : ATGTCCCAGCCGCGCTCGATTAATGCTCTCCCACTTGCAGTCATGGCAATTGCCCTCCTTGCAGGTTGCACAACAAACAA AGACAAACTGCTCCCGCACGGAGAAGAAACCATGATGGATGTTTGGCAAGAGGGAGCCCCAGGAGGGGCAAGCAGCTCAA GCAGCCGACAAGTGCTCGATGCACGGTTACAACTGAGACGTCCCCTCGATGAGCAGCAGATGACGAATCAGCGCGCCACA GCAGACGACTTTGCACGCACCGCACAGAACGAGATCTACAGTCAATTTAAACGCCTGCCAAATCCTGACCTGGTCATGTA CGTGTTCCCGCATCTGGCCGGATCTGACCCAGTGCCTGTACCCGGATACACCACCGTTTTTCCGCTCTATCAGCGTGTGC AGTACGCAATGCCAGGCGAGCGGACAGAGGACTATTGA Protein sequence : MSQPRSINALPLAVMAIALLAGCTTNKDKLLPHGEETMMDVWQEGAPGGASSSSSRQVLDARLQLRRPLDEQQMTNQRAT ADDFARTAQNEIYSQFKRLPNPDLVMYVFPHLAGSDPVPVPGYTTVFPLYQRVQYAMPGERTEDY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13363.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 3e-36 | 70 |
| pph83 | CAI36124.1 | signal recognition particle GTPase | Not tested | PPHGI-1 | Protein | 7e-44 | 69 |
| RL023 | AAP84150.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 3e-39 | 68 |
| EXA34 | ABD94643.1 | conserved hypothetical protein | Not tested | ExoU island A | Protein | 3e-40 | 68 |
| ORF SG58 | AAN62280.1 | hypothetical protein | Not tested | PAGI-3(SG) | Protein | 1e-36 | 63 |
| ORF C48 | AAN62142.1 | hypothetical protein | Not tested | PAGI-2(C) | Protein | 7e-36 | 62 |
| PMI2577 | YP_002152296.1 | lipoprotein | Not tested | Not named | Protein | 3e-28 | 48 |
| STY4571 | NP_458656.1 | putative lipoprotein | Not tested | SPI-7 | Protein | 1e-28 | 47 |
| t4267 | NP_807866.1 | lipoprotein | Not tested | SPI-7 | Protein | 1e-28 | 47 |
| Pmu_03080 | YP_005176207.1 | conjugative transfer region lipoprotein | Not tested | ICEPmu1 | Protein | 4e-21 | 46 |
| YpsIP31758_3706 | YP_001402660.1 | lipoprotein | Not tested | YAPI | Protein | 9e-25 | 44 |
| api38 | CAF28512.1 | putative lipoprotein | Not tested | YAPI | Protein | 5e-25 | 44 |
| YE3483 | YP_001007642.1 | putative lipoprotein | Not tested | YAPI | Protein | 1e-23 | 41 |
