Gene Information

Name : PFL_4705 (PFL_4705)
Accession : YP_261788.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Unknown
Product : integrating conjugative element protein
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG0711
EC number : -
Position : 5433332 - 5434828 bp
Length : 1497 bp
Strand : +
Note : identified by match to protein family HMM TIGR03752

DNA sequence :
GTGAACATTCAAAGTAATCCCCTACTGAAGTGGCTTGCAGTGCCCTTTCTTGTCTTCGCTGTGGTGATGTTCTTTACCGC
AACAAAAAAGGGACAGGTGGATCACCAAGATAACAACGTCGTGGCCATCGGTTCCGATGAGGCCCAAAAACTAGGTGTGG
ATGGCGATACACCAGGTGACACCCTTCGGACCGTAGTCACAGAAAGCAAGGAGCTCAGGAAACAGGTGGCTGAGATGCTA
AAGATCAACAACGATCAGAAGTCTCAGAACGAAGAGCTTCAGAAGCAGCTGAAGGACATGGACTCAAAAGTTGAGAACCG
TTTAGACAATGCAAAAAAAGAACTACAGGACGAGGTTCAGAACAAGAGCCAAGGCCTGATCGACTCTCTGCAAACTCAAC
TCAACAACCTCAGCAACCAACCTAACGCAACCGGGGGCGACCTTCCAATCGGGTTTGGTGTGCAGCCAGGTGACGGCAAA
GGCTTCGAACAGTCTCCTACAACAAAGGACGGCCTTGTCTGGATTGAACCACGCGATGCCACTGCCGTTGACGCCAACGG
TAAACCGTTGCCCCTTGGCTCTAGTCAGGCTGCAAGCGGGTTCAACTTTCCTACCAGCTTCGGCCCGGCAGCCAACAGAG
GTCAGAATGCACTGGAACAGATCGATCAAGGCCTGCGTCCAGGAAATCAACAGGTCGACCGTGAAACCAGGAAGTTTGTG
CGCAAGACCTACACTTTGCCCCAGAACTCCACATTGATGGGATCAGTGGCCATGTCGGCCCTGATCGGCCGGGTGCCAAT
TGATGGGACCGTCAACGACCCGTTTCCTTTCAAGATCCTGATTGGCCCAGACAACCTGACTGCGAACGGCATCGAGCTCC
CCAACGTCGCTGGTGCAGTCGCAACAGGCACCGCCAGTGGCGACTGGACACTCTCATGTGTAAGAGGGCAGGTCCGCAGC
CTGACGTTTGTCTTCAACGACGGCACTGTCAGGACCTTCCCGGCGCCGGCTGAAGACGCGGACGGCAACCAGAACAACAA
CCAGGCCAGCAGTACAGATGGGAAGACCATTCAGGGTGGCCTTGGCTGGATCAGCGACTCCTACGGCGTTCCATGTATCT
CGGGTGATCGGCGCTCCAATGCGGCCGAATACTTGACTAATCAGTCGCTTGTTACTGCCGCCGGTGCCGGCGTTGCGAAG
CTGCTTAAAGCCGACGAGAGCAACAACACAACGATGTTTACCGGGAATGGCACCTCTTTCGGCACCACCGGTTCATCAGG
AAATTCCGCGATCGGGTCGATCTTGTCCGGAGGCGTAAGTGATATCCGCTCCTGGATGAACAAGCTCTATGGCGAAGCAT
TTGCTGCTGTGTATGTACAGCCTGGCGCGAAGGTCGCCGTACACCTCGATCAGCAACTGGCGATCGACTATGAACTGAAA
GGTCGCAAAGTCGACTACCACTCCGGAGCGAATAATGTCCCAGCCGCGCTCGATTAA

Protein sequence :
MNIQSNPLLKWLAVPFLVFAVVMFFTATKKGQVDHQDNNVVAIGSDEAQKLGVDGDTPGDTLRTVVTESKELRKQVAEML
KINNDQKSQNEELQKQLKDMDSKVENRLDNAKKELQDEVQNKSQGLIDSLQTQLNNLSNQPNATGGDLPIGFGVQPGDGK
GFEQSPTTKDGLVWIEPRDATAVDANGKPLPLGSSQAASGFNFPTSFGPAANRGQNALEQIDQGLRPGNQQVDRETRKFV
RKTYTLPQNSTLMGSVAMSALIGRVPIDGTVNDPFPFKILIGPDNLTANGIELPNVAGAVATGTASGDWTLSCVRGQVRS
LTFVFNDGTVRTFPAPAEDADGNQNNNQASSTDGKTIQGGLGWISDSYGVPCISGDRRSNAAEYLTNQSLVTAAGAGVAK
LLKADESNNTTMFTGNGTSFGTTGSSGNSAIGSILSGGVSDIRSWMNKLYGEAFAAVYVQPGAKVAVHLDQQLAIDYELK
GRKVDYHSGANNVPAALD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RL024 AAP84151.1 conserved hypothetical protein Not tested PAPI-1 Protein 6e-141 69
EXA35 ABD94644.1 conserved hypothetical protein Not tested ExoU island A Protein 2e-144 67
unnamed ABR13364.1 hypothetical protein Not tested PAGI-5 Protein 1e-145 67
pph82 CAI36123.1 hypothetical protein Not tested PPHGI-1 Protein 1e-119 55
ORF C49 AAN62143.1 hypothetical protein Not tested PAGI-2(C) Protein 3e-93 47
ORF SG59 AAN62281.1 hypothetical protein Not tested PAGI-3(SG) Protein 3e-86 45