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Name : traD (PFL_4696) Accession : YP_261779.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : conjugative coupling factor TraD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3505 EC number : - Position : 5425475 - 5427691 bp Length : 2217 bp Strand : + Note : identified by match to protein family HMM TIGR03754 DNA sequence : ATGACCACCTATTCACTTGAATCACTTCTACGCCCTCCGGTGGAGCTGTTCACCACGGCTGTCTGCTACGTCGCGGCGGC ACTCTGCGTTCAAGCTCCATGGGCGTTCGCACTGACACCTCTGTTCGGAATAGCCACAGCACTGGGCTTCGCCTACCTGG GAACAGTTCGATTACTGCAGGCGCGCAGGGTGCTGCGTTACCAGGCCAACCTTAGACGACTTCCCCATTACACAATGACT AGCGCTGAAATGCCGATCAGCAACGAGCGTCTATTCATCGGCAGGGGATTTCGCTGGACGCAGAAACACACCCAACGCTT AGCTGATACCTACCTGCCCCAATACTCCAGATACGTCGAACCGACCAGGCTGTATGAGGGAGCGCGCTGGCTGGAGGAGC GTCTGGAATTTGCCCCCTTCCCTCTGAAGGCAATCACAAAGGTCACCAGTTGGGACTCCAGCTTGAATCCCGCCCGGCCT CTTCCACCCGTGGGAGGTTTGCCGAGGTTGCATGGGATAGAGCCAGATGAGCAGAACGTCAGCCTTCCACTCGGCGAGCG GGTTGGACACACTTTGGTACTGGGGACCACCCGCGTCGGGAAAACACGGCTGGCTGAGGTTTTCATCACGCAAGATATTC GCCGGACACATCGCCGCGGATCCCCACGGCGCATGGGTAGAAGAAGCCAAACCCCGCATCGCTGGAGCCGGCGTGGGCGA CCAGAACAACGACCTGATCATGAGGTCGTGATTGTCTTTGATCCGAAGGGCGACGCTGATCTCCTAAAGCGCATGTATGT CGAATGCAAGCGAGCTGGGCGTCTCGATGAGTTTTATGTGTTTCACCTGGGGTGGCCAGACATCTCCGCACGCTACAACG CTATTGGCCGCTTCGGCCGGATAAGCGAGGTCGCAACCCGTATCGCCGGCCAGCTTTCTGGAGAAGGCAACTCAGCTGCG TTCAGGGAGTTCGCATGGCGATTCGTCAACATCATCGCTCAGTCGCTGGTCGCCCTCGGTCGGCGCCCAGACTACGAGCA GATCCGCCGGCACGTGATCAACATCGACGAGCTGTTCATTGAGTACGCGCAGAAATACTTCGCTGAACATGATCCGAAGG CATGGGAGACCATCGTTGCGCTGGAAGCGAAGATCGATCGAAGAAATCTCTCGTTCGCGATGAAAGACCGCCCGCTGCGC GTGGTAGCCGTCGACATGTACTTGACTCAGAAACGCATCAACGACTCTGTGATGGATGGTCTGCGCAGCGCAGTACGCTA TGACAAGACCTACTTCGACAAGATCGTCGCATCCCTACTGCCGCTCCTTGAGAAACTCACTACGGGTCGGATTGCAGAGT TACTCGCCCCGGACTACCTGGATCTTTCGGATCAGCGCCCCATTTTCGACTGGATGCAAGTCATCCGAAAACGTGCCGTG GTTTACATCGGCCTCGATGCACTCTCGGATACCGAAGTCGCCGCGGCAGTGGGCAACTCGATGTTCAGCGACTTGGTATC TGTTGCCGGCCACATCTACAAACACGGCATCGACGACGGGCTGCCTGGAAACATGGCCGGGGGTAAGGTACGTATCAACC TCCACGCAGATGAGTTCAACGAACTGATCGGTGACGAGTTCATCCCGATGGTGAACAAGTCTGGCGGCGCCGGTATGCAG GTCACTGCATATACGCAGACCATGAGCGATATCGAAGCGAAGATCGGGTCGAAAGCCAAAGCCGGCCAGGTTATCGGTAA CTTCAACAACCTGTTCATGCTACGTGTTCGGGAGACCGCGACGGCAGAACTTCTTACCAATCAGCTACCCAAGGTGCAGA TCTACAACAGCACCCCGGCGAGCAGTGCGAACGACTCACTCAACGGTAAGACAGCATTCACCTCTAGCTCGCACGACCAG TTGCAGGCGACAAGCGTGCCGATGATTGAACCAGCTCATGTAGTTGGGTTGCCGAAGGGGCAGGCTTTCGCGCTGATCGA AGGAGGCAACCTCTGGAAGATCCGAATGCCGCTCCCCGCCAACGACCCCGATGAGGTCATGCCAGGTAACCTGCAGGACC TCGCTGCCGGCATGCGGCGATCATCGGCTGCATCTTTAGAGTGGTGGGAAGCCCCTGGCTATCAGGAGCTGAAAAGCGCT CTGCCTGAGGACCTGGTCGAAGACTTTCGCCAAGCTGCTACCGATGACGCGGCGTGA Protein sequence : MTTYSLESLLRPPVELFTTAVCYVAAALCVQAPWAFALTPLFGIATALGFAYLGTVRLLQARRVLRYQANLRRLPHYTMT SAEMPISNERLFIGRGFRWTQKHTQRLADTYLPQYSRYVEPTRLYEGARWLEERLEFAPFPLKAITKVTSWDSSLNPARP LPPVGGLPRLHGIEPDEQNVSLPLGERVGHTLVLGTTRVGKTRLAEVFITQDIRRTHRRGSPRRMGRRSQTPHRWSRRGR PEQRPDHEVVIVFDPKGDADLLKRMYVECKRAGRLDEFYVFHLGWPDISARYNAIGRFGRISEVATRIAGQLSGEGNSAA FREFAWRFVNIIAQSLVALGRRPDYEQIRRHVINIDELFIEYAQKYFAEHDPKAWETIVALEAKIDRRNLSFAMKDRPLR VVAVDMYLTQKRINDSVMDGLRSAVRYDKTYFDKIVASLLPLLEKLTTGRIAELLAPDYLDLSDQRPIFDWMQVIRKRAV VYIGLDALSDTEVAAAVGNSMFSDLVSVAGHIYKHGIDDGLPGNMAGGKVRINLHADEFNELIGDEFIPMVNKSGGAGMQ VTAYTQTMSDIEAKIGSKAKAGQVIGNFNNLFMLRVRETATAELLTNQLPKVQIYNSTPASSANDSLNGKTAFTSSSHDQ LQATSVPMIEPAHVVGLPKGQAFALIEGGNLWKIRMPLPANDPDEVMPGNLQDLAAGMRRSSAASLEWWEAPGYQELKSA LPEDLVEDFRQAATDDAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EXA47 | ABD94656.1 | TraG/TraD family protein | Not tested | ExoU island A | Protein | 0.0 | 80 |
| unnamed | ABR13375.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 80 |
| RL047 | AAP84173.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 79 |
| traG | CAI36113.1 | putative TraG family conjugative protein | Not tested | PPHGI-1 | Protein | 0.0 | 74 |
| ORF C65 | AAN62159.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 69 |
| ORF SG68 | AAN62290.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 68 |
| STY4562 | NP_458648.1 | hypothetical protein | Not tested | SPI-7 | Protein | 7e-176 | 57 |
| t4260 | NP_807858.1 | hypothetical protein | Not tested | SPI-7 | Protein | 7e-176 | 57 |
| PMI2588 | YP_002152307.1 | plasmid transfer protein | Not tested | Not named | Protein | 1e-166 | 57 |
| api27 | CAF28501.1 | hypothetical protein | Not tested | YAPI | Protein | 4e-179 | 56 |
| YpsIP31758_3718 | YP_001402672.1 | hypothetical protein | Not tested | YAPI | Protein | 2e-178 | 56 |
| YE3493 | YP_001007651.1 | TraG-family protein | Not tested | YAPI | Protein | 2e-179 | 56 |
| Pmu_03190 | YP_005176218.1 | conjugal transfer protein TraD | Not tested | ICEPmu1 | Protein | 0.0 | 56 |
| traD | AAW83057.1 | TraD | Not tested | GGI | Protein | 2e-130 | 48 |
