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Name : PFL_4679 (PFL_4679) Accession : YP_261762.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : type IV pilus biogenesis protein Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 5406087 - 5407253 bp Length : 1167 bp Strand : + Note : identified by match to protein family HMM PF00482 DNA sequence : ATGCTTGATTACCTGCAGGATCTCCGCGCCGGTATCAAAGAGACCACTCGCGACTGGCTGGCCAAGTTCTACGCAGCGCA GTTCGGGAAAAAGGAGCGCATTCAGTTCTACGAGAGCTTGATGGGTGTGCTCGAGGACGGGATTCCGATCGAGGTCGCTC TTGAAACTGTGCAGAAAGCCTTCAGCAATGACGGTAAAGAGCTGCATCCGGTTTCAATCATTTGCTCCGAGATCGCGATG TCCGTGCGTGGCGGGAAGTCTTTGGCTCAATCCTGCAGGAGCCGGCTTCCTTACGAGGAGACCTCTCTCATCGAGACTGG TGAACAGACCGGCAACCTGGTTCAGGCGTTTCGGGACTGTGTGCGGATCATTGAGATTCGCCAGCGAATCGCTCGGCTCA TTCAATCTGTAGTTGCGATGCCCTCTCTGACCTGGAGTCTGATGTGGGCATTGCTTTATGTGATTGCGCTCTGGATGGTG CCGTCGATGACGAAACGCTCGGATCCAGAAGCCTGGACCGGCGTACCCGCGCTTCTCTACCACCTTTCAAATTTGGTGAG CCATTACGGCTTCTTCATCCTGGGCGCGGTAGTGATCGTCATTCTCACATCAACCCTGACATTACCTGTCTTTTGCGGCC TTGCGCTCGAGCCGACCAGCCCAACTTGGAAGATTCAGTTGAGCAAAATCATGCAGGGCGCACGTTTGAAGATGGAGTCC GCGCCGCCATGGAGCACCTACAAGGTCCTCCACGGATCGATCTTTCTGATGAACATGTCAGTGATGCTGCGTAGCGGCAT CAACCAGCTCGACGCGCTGACCATCCTCAAGCGGGGGGCTCCCCCATGGCTTCGAGAGCGCTTGGACGCCATTCACTACG GTGTTCGCTCAGGCAAGAACTTCGGCCAGGCGCTGAAGCTTGCTGGTCATAGGTTTCCCGACGCCATGGCCATTCACTAC CTGGAAGTTCTGGCCGTGCGCAAAGGCTTTGCCGAATCCATGGAGCGTTTCGCATCGCGCTGGCTCGAGCAGACCCTGAG GAAGGTCGAGGCAACCTCAAAATTTCTTATCGCATTTTCATCGGTGTGCATGGGCGTTTTGATGATCCTGGTCGTAGTGG GGATTTTCCAGATGGCCCGCGGCGTTATGGACTCAGCAAGTTTCTAA Protein sequence : MLDYLQDLRAGIKETTRDWLAKFYAAQFGKKERIQFYESLMGVLEDGIPIEVALETVQKAFSNDGKELHPVSIICSEIAM SVRGGKSLAQSCRSRLPYEETSLIETGEQTGNLVQAFRDCVRIIEIRQRIARLIQSVVAMPSLTWSLMWALLYVIALWMV PSMTKRSDPEAWTGVPALLYHLSNLVSHYGFFILGAVVIVILTSTLTLPVFCGLALEPTSPTWKIQLSKIMQGARLKMES APPWSTYKVLHGSIFLMNMSVMLRSGINQLDALTILKRGAPPWLRERLDAIHYGVRSGKNFGQALKLAGHRFPDAMAIHY LEVLAVRKGFAESMERFASRWLEQTLRKVEATSKFLIAFSSVCMGVLMILVVVGIFQMARGVMDSASF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pilR | CAI36063.1 | type IV pilus protein | Not tested | PPHGI-1 | Protein | 4e-70 | 45 |
| pilR2 | AAP84206.1 | PilR2 | Virulence | PAPI-1 | Protein | 8e-60 | 41 |
