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Name : pilQ (PFL_4678) Accession : YP_261761.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : pilus assembly protein PilQ Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 5404562 - 5406094 bp Length : 1533 bp Strand : + Note : identified by match to protein family HMM PF00437 DNA sequence : ATGACCATCTTAGAAACCCCACCACTGGCGAGCTCTTTATCGACCACTCCCCAGTTCGCCGGCGCCGTTCTGACCGCGCA AGGAGAACGCTTCGAGCTCAAGCCCGACCAGCGACAGATCTGCGCCTTGACCGAAGACGGCACACTGCATATTTCAGCGC AGCACCAAGCCGACCCGCATGTCATGGCCTTCATGGATAAGCTCGAGCATGAGCAGTTCGAGTACGTGATCAAGCTTTGC TCGATGACCGATATCAGGTCGATCTATCAAGCATCGAGCCAGATCCCCGGCTCAGATCAGATCGATACTGTCCGCCAAGC GCATGCACTAAGGATCCTGGCGGACGCACACAAGCGTGGAGCAAGCGACATCCACATCGTGGTCGGATATGAAATCACCA AGATTTTTTATCGTATTCACGGCTTGCTGTGGGAGGCCGGACAGGAAAAAAGCGGCGTGGGGTTGGAGCTGTGTTCTGCG CTCTACAACAGCATGTGTGACGTCACCAAAGATCACTTTCAGCCGACCATCCCGCAAGATGCCCGTGTTGCTCGCAGCTT TGTAGAAACCCTGGGTTTATTTGGTGCTCGCCTTTCGACCCGGCCGTTAGTCGATGGACCGCTGATGGTGATGCGTCTGC TCTACGACGATGAGTCGAAGGCATCGCTTGAGGATCTCGGTTTTCTTCCTGAACAGATTGCTCAGTATGCACGCCTGCGC AGCCTCCCCTACGGCGTCAATCTGATCACCGGCCCTACCGGATCCGGTAAATCGAAGTCGCTGCAGATCAACCTGAATCT CCTCTTCGAAGAAACCGAGGGCACGCGCCACATCCTCACGATCGAAGATCCTCCCGAGTACCCACTCAAAGCCAACCAGT CCCCGCTGGGACCTGGTGAAAGCTGGCAAGCAGGGATCAAAAGCTCGGTTCGGCTTGATCCAGACGTGCTCATGTACGGT GAGATTCGTGATCTCGAGTCTGCACAAGCCGCTTACAGTGGCGGAATGACCGGCCACCTGGTCTGGGGCACGCTGCATAC CAACAATGCTGTTGCTTCCCTCCAACGTCTGATCGACATGGGTGTACCAGATTACCTGGTGACCGATCCAGCGCTGACAA CGGGGCTCATCAATCAGTCGCTTCTCCCTGTGCTGTGCCAGTCCTGCTGCGTGCCCCTGCGAGATCATCTCGATAGCGTA AGCCAGGGCCTACGTGAACGACTGGAGCAACTCCAGATCATCGACCAGGTAAACCTGGTCGGACCAGGGTGTCCTCACTG CAAAAAACTTGGGGTGGCAGGCCGCACCGTAGTGGCTGAGATCCTTATGACCGACCTGCTATTCATGAAGGTCTTCTCCG AACTGGGAGCGAGTGCTGCTCGCCGGCACTGGGTCAAGGAGATGGGCGGCATCACCAAGATCGAACACGCCATCAGGAAG ATCAAAGCCGGAACTGTGGATCCGCGACATGCAGAAACATTGATCGGCCCACTGGACTTTGATCGTCAGCTAGTGGAGCT CTCTCATGCTTGA Protein sequence : MTILETPPLASSLSTTPQFAGAVLTAQGERFELKPDQRQICALTEDGTLHISAQHQADPHVMAFMDKLEHEQFEYVIKLC SMTDIRSIYQASSQIPGSDQIDTVRQAHALRILADAHKRGASDIHIVVGYEITKIFYRIHGLLWEAGQEKSGVGLELCSA LYNSMCDVTKDHFQPTIPQDARVARSFVETLGLFGARLSTRPLVDGPLMVMRLLYDDESKASLEDLGFLPEQIAQYARLR SLPYGVNLITGPTGSGKSKSLQINLNLLFEETEGTRHILTIEDPPEYPLKANQSPLGPGESWQAGIKSSVRLDPDVLMYG EIRDLESAQAAYSGGMTGHLVWGTLHTNNAVASLQRLIDMGVPDYLVTDPALTTGLINQSLLPVLCQSCCVPLRDHLDSV SQGLRERLEQLQIIDQVNLVGPGCPHCKKLGVAGRTVVAEILMTDLLFMKVFSELGASAARRHWVKEMGGITKIEHAIRK IKAGTVDPRHAETLIGPLDFDRQLVELSHA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pilQ | CAI36062.1 | type IV pilus protein | Not tested | PPHGI-1 | Protein | 9e-137 | 56 |
| pilQ2 | AAP84207.1 | PilQ2 | Virulence | PAPI-1 | Protein | 7e-109 | 46 |
