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Name : pilN (PFL_4676) Accession : YP_261759.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : type IV pilus protein, PilN Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 5400859 - 5402700 bp Length : 1842 bp Strand : + Note : identified by similarity to GB:AAP22528.1; match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM TIGR02520 DNA sequence : ATGACTCCATTGTTCCGGTTTCGCTGGGCCGCGGTCCTAGTGACCTTACCCCTGATCAGCAGCTGCGCCGTGCAGCGCGT GAACGACTCCGCGAGTCGCGCAGAGAACGAGGCGTCAACCGCTCGCCAGTACAACGGCTACCTCCAAAACCAGCAGCCCG AGCCCGCTCGAGATACCGTCATTTTCAGTGAAAAACCCTGGGTGTCGACCCAACCACTGGTGACCAAGCGTGGTCTCCCT CTGAATATCGACAGGGACATTGCCTATCGACCGGCATCGGCGGTTTCTCTCTCTGAAGTCGCTCAGTTCATCACGAGAGA AACCGGCCTGCCGGTGGTTGTCGCACCCGATGCACTAAACCCATCCATCTTGTCCTCCCGCCCCGGCAACAGCGGCGCCG CTGCGGCTCCTCCTGCCGTCACCATGAGCAATCCGGATAACTTGGCTGCGCTGATGCCAACCGGGCTGGCAGGCAGCCTT CCTAGCGGCGCAAGAAGCTTGGAGAGCGAGTTGCTATCGGGTACACCTGGCCTGATCAGTGGAATCAAGTTCTCCGGCCC AGTCTCAGCACTGTTGAACCAGGTCACGTCTCGCTTGGGCCTTTCCTGGCACTACGACCCCCAGCTGCAGGGTGCTCGAA TCACCTACTTCGACACCAGGACCTTCGACGTCTGGGCCTTTGGAGACGACCAGGTCATCGAAAGTGTCGTCAAGTCCGGG TTGATCACCTCGACAGGGAGTGGGTCTAACGGATCCGGTGGCACTTCGTCTGGCACTGGAGCATCGGGAGACTCCGGCAG TAACCAAAGCACAACGGTTCAGATCAAGACATCGCTGCTCAGCGACATCGAGAACAACGTCAAAGCCATGCTCAGCACCC AGCCTGCTGGGCGGATTTTCCTCTCGCGCTCGACTGGTACGCTGACCGTAAGTGACCGTCCTGAGGTCCTCAACCGCATC GCAAGCTACCTGCAGAGTACAAACCGAAACATCACCAGGCAGGTGCTGTTCAACGTCAAGATCTTCGAAGTCAACTTCAC CGATCGCGACCAGACCGCTGTCAACTGGAAAGCCGTCTACAAGTCGGTCTCAGGAAGGTGGGGGCTCTCTCTCGCCAATA AGGTCGCCGGTATCAGTACCGATGCTATCTCCGGCTCTGTCAGTATCCTCGACACGTCCAGTTCGCCCTGGGCCGGTTCC AGCGCCGTAATCCAGGCCCTTTCAGAACAGGGTCGGATCTCGGACGTTCGCTCGCCCTCCATCACCACCCTGAATCTACA GCCTGCGCCTATCCAAATTGGCAACGTAAAAAGTTACGTGGCCTCCAGCTCTACCACCACCACAGCATCGGTCGGATCCA GCACCTCTCTCACGCCTGCAACAATCACCAGTGGCTTCAACATGATGCTGCTGCCGAAGATCATCGACCGAGACAACATG TTGCTGATGATCAGCATCAGCATGAGCAGCAAGCCAACGTTCACTACGTTCACCAGCAATGGTTCCAGTGTCCAAACTGC TGACTTCGACACCAAGAACGCAGCGCCCAAGGTCTTACTGCGCTCAGGGCAGACGCTGGTTCTCACTGGATTCGAGGAGA ACACCGAGAACGCCGATAAGACGGGCGTTGGAGATGCGAGTTTCTTCGGCCTGGGAGGCAGCCGTACACGCAGTAGTGAC CATTCTGCTCTCGTTGTTCTGGTTACTCCTGTGGTACTGCCAGACGACTTGGGAGCCAGCGCACAGGGCCAACCTTCATC GATACCTTCCCTGGCTCAGGGTATCAACACCTTCCCTTCTACCTCCTGCAGGCCACCGATACGTGCCTGCAACACGCTGT AA Protein sequence : MTPLFRFRWAAVLVTLPLISSCAVQRVNDSASRAENEASTARQYNGYLQNQQPEPARDTVIFSEKPWVSTQPLVTKRGLP LNIDRDIAYRPASAVSLSEVAQFITRETGLPVVVAPDALNPSILSSRPGNSGAAAAPPAVTMSNPDNLAALMPTGLAGSL PSGARSLESELLSGTPGLISGIKFSGPVSALLNQVTSRLGLSWHYDPQLQGARITYFDTRTFDVWAFGDDQVIESVVKSG LITSTGSGSNGSGGTSSGTGASGDSGSNQSTTVQIKTSLLSDIENNVKAMLSTQPAGRIFLSRSTGTLTVSDRPEVLNRI ASYLQSTNRNITRQVLFNVKIFEVNFTDRDQTAVNWKAVYKSVSGRWGLSLANKVAGISTDAISGSVSILDTSSSPWAGS SAVIQALSEQGRISDVRSPSITTLNLQPAPIQIGNVKSYVASSSTTTTASVGSSTSLTPATITSGFNMMLLPKIIDRDNM LLMISISMSSKPTFTTFTSNGSSVQTADFDTKNAAPKVLLRSGQTLVLTGFEENTENADKTGVGDASFFGLGGSRTRSSD HSALVVLVTPVVLPDDLGASAQGQPSSIPSLAQGINTFPSTSCRPPIRACNTL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pilN | CAI36059.1 | type IV pilus protein | Not tested | PPHGI-1 | Protein | 9e-125 | 58 |
| unnamed | ABR13431.1 | putative PilN | Not tested | PAGI-5 | Protein | 5e-85 | 47 |
| pilN2 | AAP84210.1 | PilN2 | Virulence | PAPI-1 | Protein | 7e-79 | 46 |
