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Name : PFL_4674 (PFL_4674) Accession : YP_261757.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : helicase Function : - COG functional category : K : Transcription COG ID : COG0553 EC number : - Position : 5396984 - 5398936 bp Length : 1953 bp Strand : + Note : identified by match to protein family HMM PF00176; match to protein family HMM PF00271 DNA sequence : ATGATGAACAGACAGCCCGTACTCATTGAGAAAGCCGTGTTTGACGGCTATGACTTCGGGATTCAGATGCCTTTCATCGA AGGGGCAAACAAGGTGCTACTCCGTCGTGGTGGATTCTTCATCCGCCGTGGCGAACATCCGCTCAACCGACATTGGAGAA TCCCCAAGAACAAACTTAACAGCGAGCTCGACCTGGTGTTCCACGAACTCATCGAGCTGGGCCAAGACCGGTTCACTGAG TCCTGGCAGAGCTTTCAAGAGAAACTGGAACAGGCTCAAGCATCTCCTCAGCGCGATGCGTTCATCTGGGGCATGCAATT GCGAATTGCGCCGCTGGCTGGAAGGGGAGTCCTGCTGTCAGGTGACTACCATCCCGGCGTCGTGGCCGTGGCCAGGCGAA TGCGCGGGGTGTTTCTTGGAAAATCCACGTCCTGGCGCATCGATGCTTCCGCTGAGCTGGTTCGAAGCAACCTCATCCTG GAGCTAGGCCTCGCGGAAGAACAAATCGGGCTACTGGATATCGTTCAGGAGCTTCTGGACGATGGTTCCGTAGCACCGGC AGAGGGTATACCTAGGATCAGCCTAGGAGGCCCTCCACAAGAGGCTATGGAGGCTACCAGCACCGAAGAGGTCTCCAATG AGATCTACCTGGCAGCCGTATCGCCTATCGAGCGCACCGAATACTCTGCACAGGCGATTTCCAAGGCCCTGGAGGGGTAT TCCCTACTCGACCATCAGCCTGCTGGTATTGCTCATCTGCTACAGCGCACAAGCGCGCTGCTGGCGGACGACATGGGATT GGGTAAAACGCGCCAAGCGGTGATTGCTGCCCACATCAGGGCCGCAGGCCTACCCATCTTAGTCGTCACCCTTTCGTCAT TGCTCATCAACTGGGAGCGCGAAATCCACGTCGTATACCCCGCTGCTACGGTCGCGCAGCAGAAGTTCGCCCCTGAGGCG CAGTGGATGATCATCAACTACGAGCGCCTGGGAGACTACGTGACCGTCGCTGAGCGCTATGCCGTGATGGTGATCGATGA GGCCCATCGCCTGAAAGAACCGACCGCGCTATGGACACGTCACGGTTTCGACATTGCAGCGAAGATCCCCAACCGCTACT TGTTGACCGGCACTCCTATCCTCAACAGAGAAACCGAACTGCACACCTTGTTGCGGCTTTCTGGGCATTCGATCGGCCAG CTACCACTCAAGGATTTCTGTGAGCAATTTTCCGGCAGCCCAGAATTTCGCCAGAACCTGCGAGCACAACTCGGGGACTG GATGCTTCGCCGGCGCAAGGATGTTTTACCTGGTCTGAAAAGTAAGCAACGACAACTCCTGGCGATTGCGATGAGCGATG AGGAGCGACGCCAATATGATGTCATTCGCCTTGAAGACAAACCGATTTTCGCCCGGCTTGGAGCGCTGCGCTTCTATCTC GAGCAGTTGAAGATCCGCATCGCGATGGATCTGCTCAGCGAGCTGGACCCAGACGACAAGGTCATCCTGTTCTGCGAATT CAAGCCAACCGTAGCCGCGTTGAAAGCACTCTGCGAAGAAGCAGGGATCGGACACGTCACTCTGGTAGGTAGCGACTCAC CCGCGAAACGCCAAAAGGCGATCGACCGGTTCCAGCAGGATCCAGACTGTCGCGTGTTCATCTGCACCACATCGGCCGCC GGCACTGGAAACAACCTCACCGCAGCAAACTATGTGTTCTTCCTGGGGCTGCCATGGACTCCTGGTCAACAAGATCAGGC CGAAGACCGGGCCTATCGCAATGGTCAGCTGCGCATGGTCATTGTCAAAATACCGCTGATAGAGGCCAGCATTGACCAAC AGTTATGGGAACTGCTGTTAGCCAAACGCCAGGTCAGCCTTGAGCTGATAGAGCCAGAAGGTCAGCAAGAAGCCCTGGCG AAGACCTTATTGGCTGCGTCCATGGGCCACTAG Protein sequence : MMNRQPVLIEKAVFDGYDFGIQMPFIEGANKVLLRRGGFFIRRGEHPLNRHWRIPKNKLNSELDLVFHELIELGQDRFTE SWQSFQEKLEQAQASPQRDAFIWGMQLRIAPLAGRGVLLSGDYHPGVVAVARRMRGVFLGKSTSWRIDASAELVRSNLIL ELGLAEEQIGLLDIVQELLDDGSVAPAEGIPRISLGGPPQEAMEATSTEEVSNEIYLAAVSPIERTEYSAQAISKALEGY SLLDHQPAGIAHLLQRTSALLADDMGLGKTRQAVIAAHIRAAGLPILVVTLSSLLINWEREIHVVYPAATVAQQKFAPEA QWMIINYERLGDYVTVAERYAVMVIDEAHRLKEPTALWTRHGFDIAAKIPNRYLLTGTPILNRETELHTLLRLSGHSIGQ LPLKDFCEQFSGSPEFRQNLRAQLGDWMLRRRKDVLPGLKSKQRQLLAIAMSDEERRQYDVIRLEDKPIFARLGALRFYL EQLKIRIAMDLLSELDPDDKVILFCEFKPTVAALKALCEEAGIGHVTLVGSDSPAKRQKAIDRFQQDPDCRVFICTTSAA GTGNNLTAANYVFFLGLPWTPGQQDQAEDRAYRNGQLRMVIVKIPLIEASIDQQLWELLLAKRQVSLELIEPEGQQEALA KTLLAASMGH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| RL089 | AAP84214.1 | DNA helicase | Not tested | PAPI-1 | Protein | 0.0 | 72 |
| unnamed | ABR13433.1 | putative DNA helicase | Not tested | PAGI-5 | Protein | 0.0 | 72 |
| pph15 | CAI36056.1 | superfamily II DNA/RNA helicase | Not tested | PPHGI-1 | Protein | 0.0 | 65 |
