Gene Information

Name : PFL_4674 (PFL_4674)
Accession : YP_261757.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Unknown
Product : helicase
Function : -
COG functional category : K : Transcription
COG ID : COG0553
EC number : -
Position : 5396984 - 5398936 bp
Length : 1953 bp
Strand : +
Note : identified by match to protein family HMM PF00176; match to protein family HMM PF00271

DNA sequence :
ATGATGAACAGACAGCCCGTACTCATTGAGAAAGCCGTGTTTGACGGCTATGACTTCGGGATTCAGATGCCTTTCATCGA
AGGGGCAAACAAGGTGCTACTCCGTCGTGGTGGATTCTTCATCCGCCGTGGCGAACATCCGCTCAACCGACATTGGAGAA
TCCCCAAGAACAAACTTAACAGCGAGCTCGACCTGGTGTTCCACGAACTCATCGAGCTGGGCCAAGACCGGTTCACTGAG
TCCTGGCAGAGCTTTCAAGAGAAACTGGAACAGGCTCAAGCATCTCCTCAGCGCGATGCGTTCATCTGGGGCATGCAATT
GCGAATTGCGCCGCTGGCTGGAAGGGGAGTCCTGCTGTCAGGTGACTACCATCCCGGCGTCGTGGCCGTGGCCAGGCGAA
TGCGCGGGGTGTTTCTTGGAAAATCCACGTCCTGGCGCATCGATGCTTCCGCTGAGCTGGTTCGAAGCAACCTCATCCTG
GAGCTAGGCCTCGCGGAAGAACAAATCGGGCTACTGGATATCGTTCAGGAGCTTCTGGACGATGGTTCCGTAGCACCGGC
AGAGGGTATACCTAGGATCAGCCTAGGAGGCCCTCCACAAGAGGCTATGGAGGCTACCAGCACCGAAGAGGTCTCCAATG
AGATCTACCTGGCAGCCGTATCGCCTATCGAGCGCACCGAATACTCTGCACAGGCGATTTCCAAGGCCCTGGAGGGGTAT
TCCCTACTCGACCATCAGCCTGCTGGTATTGCTCATCTGCTACAGCGCACAAGCGCGCTGCTGGCGGACGACATGGGATT
GGGTAAAACGCGCCAAGCGGTGATTGCTGCCCACATCAGGGCCGCAGGCCTACCCATCTTAGTCGTCACCCTTTCGTCAT
TGCTCATCAACTGGGAGCGCGAAATCCACGTCGTATACCCCGCTGCTACGGTCGCGCAGCAGAAGTTCGCCCCTGAGGCG
CAGTGGATGATCATCAACTACGAGCGCCTGGGAGACTACGTGACCGTCGCTGAGCGCTATGCCGTGATGGTGATCGATGA
GGCCCATCGCCTGAAAGAACCGACCGCGCTATGGACACGTCACGGTTTCGACATTGCAGCGAAGATCCCCAACCGCTACT
TGTTGACCGGCACTCCTATCCTCAACAGAGAAACCGAACTGCACACCTTGTTGCGGCTTTCTGGGCATTCGATCGGCCAG
CTACCACTCAAGGATTTCTGTGAGCAATTTTCCGGCAGCCCAGAATTTCGCCAGAACCTGCGAGCACAACTCGGGGACTG
GATGCTTCGCCGGCGCAAGGATGTTTTACCTGGTCTGAAAAGTAAGCAACGACAACTCCTGGCGATTGCGATGAGCGATG
AGGAGCGACGCCAATATGATGTCATTCGCCTTGAAGACAAACCGATTTTCGCCCGGCTTGGAGCGCTGCGCTTCTATCTC
GAGCAGTTGAAGATCCGCATCGCGATGGATCTGCTCAGCGAGCTGGACCCAGACGACAAGGTCATCCTGTTCTGCGAATT
CAAGCCAACCGTAGCCGCGTTGAAAGCACTCTGCGAAGAAGCAGGGATCGGACACGTCACTCTGGTAGGTAGCGACTCAC
CCGCGAAACGCCAAAAGGCGATCGACCGGTTCCAGCAGGATCCAGACTGTCGCGTGTTCATCTGCACCACATCGGCCGCC
GGCACTGGAAACAACCTCACCGCAGCAAACTATGTGTTCTTCCTGGGGCTGCCATGGACTCCTGGTCAACAAGATCAGGC
CGAAGACCGGGCCTATCGCAATGGTCAGCTGCGCATGGTCATTGTCAAAATACCGCTGATAGAGGCCAGCATTGACCAAC
AGTTATGGGAACTGCTGTTAGCCAAACGCCAGGTCAGCCTTGAGCTGATAGAGCCAGAAGGTCAGCAAGAAGCCCTGGCG
AAGACCTTATTGGCTGCGTCCATGGGCCACTAG

Protein sequence :
MMNRQPVLIEKAVFDGYDFGIQMPFIEGANKVLLRRGGFFIRRGEHPLNRHWRIPKNKLNSELDLVFHELIELGQDRFTE
SWQSFQEKLEQAQASPQRDAFIWGMQLRIAPLAGRGVLLSGDYHPGVVAVARRMRGVFLGKSTSWRIDASAELVRSNLIL
ELGLAEEQIGLLDIVQELLDDGSVAPAEGIPRISLGGPPQEAMEATSTEEVSNEIYLAAVSPIERTEYSAQAISKALEGY
SLLDHQPAGIAHLLQRTSALLADDMGLGKTRQAVIAAHIRAAGLPILVVTLSSLLINWEREIHVVYPAATVAQQKFAPEA
QWMIINYERLGDYVTVAERYAVMVIDEAHRLKEPTALWTRHGFDIAAKIPNRYLLTGTPILNRETELHTLLRLSGHSIGQ
LPLKDFCEQFSGSPEFRQNLRAQLGDWMLRRRKDVLPGLKSKQRQLLAIAMSDEERRQYDVIRLEDKPIFARLGALRFYL
EQLKIRIAMDLLSELDPDDKVILFCEFKPTVAALKALCEEAGIGHVTLVGSDSPAKRQKAIDRFQQDPDCRVFICTTSAA
GTGNNLTAANYVFFLGLPWTPGQQDQAEDRAYRNGQLRMVIVKIPLIEASIDQQLWELLLAKRQVSLELIEPEGQQEALA
KTLLAASMGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13433.1 putative DNA helicase Not tested PAGI-5 Protein 0.0 72
RL089 AAP84214.1 DNA helicase Not tested PAPI-1 Protein 0.0 72
pph15 CAI36056.1 superfamily II DNA/RNA helicase Not tested PPHGI-1 Protein 0.0 65