|
Name : topA_2 (PFL_4672) Accession : YP_261755.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : DNA topoisomerase I Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 5393086 - 5395002 bp Length : 1917 bp Strand : + Note : identified by similarity to SP:P39814; match to protein family HMM PF01131; match to protein family HMM PF01751 DNA sequence : ATGAAGCTCATGATCATCGAAGCGCCGGGCAAGCTGAAAAAGCTGGCCCCGATGCTCAAGAAACTACGGCCGGGCGAGCA TTGGGAGGTGGTCGCCAGTGGCGGCCATATAAGGGATCTTCCCGAGAAGGGACACGACGACACGATGATTATTGCCGGGG TGCTCAAGGATCTGCGCCCGGTGTACACGATCAGGGACAAGAGTTCCGGCAGGATCAAAACGATGCGCGAAGCTCTTGCC CGGGCAACAGAAATCTACATCGCAACGGACCCCGATCGGGAAGGTGAAAGTATCGCGTGGCACATCCAGCAGACACTGCG GATCCGCGACTACAAGCGCATTGCCTTTAACGAGGTCACCCACACGCGGGTGAAGGAGGCGCTGGCCAATCCGCGCAAGA TTGACGCCCAGCTGGTGGCTTCACAGGAGTGCCGGCGAGTCCTCGATAGGCTCGTTGGCTATCTGGTGACTGGTGAGCTA CGGAGGGTGCTTGGACTGCCCACAACAGCAGGCAGGGTACAGTCGGTTGCCGTTTACCTGGTGGTGTTGAGAGAGCGCGA GATCCGCGACTTTAAGGTCGTTCACCACTTTGGCGTTCGCCTGCAGTTCCAGAACCAAACGACTGGTAGCTCCTGGACGG CTGACTGGGTGACCGTTCCAGACTTCACCTCCAAGGAACACCCGTATGTGCAGGATGGCACCCTGGCTGCACAGGTCGCC GGGGTCAGGAACGTCATTGTGGAGTCCTGCGAAGATACCAAGGAACGCCGAGCCCCCTACCCTCCCTACATATCCTCAAC CCTTCAACAAGCGGCGAGCGTTGCGTTGAAGTGGGACCCTGACAAGACCATGCAGATCGCTCAGAGGCTGTATGAACAGG GCGTGATCACCTACCACAGAACAGACAACCCGAACGTCGGCGACGATGTCATGGGTGATATCCGCGCTGTTGCACAAGCT CTTGGTATACCAGCGGTTGAGAAGCGAAGGGAGTTTAGGGCAGCGGAGGGAGCCCAACTGGGCCACCCCGCGATCGCCCC AACGACCTGGGCGGACGAGGTTGCAGGGGAAGATGATGAGCAGCGTCAGCTGTACAAACTCATCCGGATCCGGGCTCTGG CAAGTCAGCTCGCTGATGCCATCTATGACGCCAGGATTGTGAAGCTCTTGGCGAAAGGCCCAGATCAACGCCCTCTGCGT TTCAGTGGATCTTGTAGGACTGTTGCTTACCGCGGATGGATGCAGCTTCTGGCGGGAGACGACACGGATGAAGAAGGCGC TGAAGCAGCCAACAACGAGATCCCAAAGCTGGAGCCAAAGCAGATCTTGCCGGTTCTGAATGGCCAAGTGCTGAACCAGA AAACCAAAGCTCCGCCGCGCTACACGAAAGCCAGTCTGGTCAAGGAGCTCGAACGTCAGGGCATTGGGCGGCCGGGTACT TTCGCCTCGATCATCAAGAACATCACCAGCAGATCCCAAGTGATTGAGGAGAAACGAAAGCTTATACCAGGTCCGCTCGG CGAGCAGACCATTGCCCAACTCGAAGGCCGGTTTAGCTTCGTGCAGACTCAGTTCACCAGCAGTATGGAACGGGCCTTAG ACAAGATTGCTGACGGCCAGAGTACCTACAACGCAGTGGTTTCCAAGTTTTACGAACACCTGCAGAGGGAACTGTCATCG CTCAAAGACGCTCCTTCACTCCGTATGCAATCTGCACGCACGAGCGCTTCAACAACGACAGGGCCTGAACATCAGTACCT GTGCGGCAAATGCGGCAAGCACCTGGTCAGACGACAGAAACGAGGTGAAGGCGGGTATGACTTCTGGGCGTGTTCCGGGT ACAAGGATACGGGATGCAAGGTCAGCTACCCGTCGGTCAAAGAAAAGCCCGACCTGACTAAGGCCAGAGGCCTCTAG Protein sequence : MKLMIIEAPGKLKKLAPMLKKLRPGEHWEVVASGGHIRDLPEKGHDDTMIIAGVLKDLRPVYTIRDKSSGRIKTMREALA RATEIYIATDPDREGESIAWHIQQTLRIRDYKRIAFNEVTHTRVKEALANPRKIDAQLVASQECRRVLDRLVGYLVTGEL RRVLGLPTTAGRVQSVAVYLVVLREREIRDFKVVHHFGVRLQFQNQTTGSSWTADWVTVPDFTSKEHPYVQDGTLAAQVA GVRNVIVESCEDTKERRAPYPPYISSTLQQAASVALKWDPDKTMQIAQRLYEQGVITYHRTDNPNVGDDVMGDIRAVAQA LGIPAVEKRREFRAAEGAQLGHPAIAPTTWADEVAGEDDEQRQLYKLIRIRALASQLADAIYDARIVKLLAKGPDQRPLR FSGSCRTVAYRGWMQLLAGDDTDEEGAEAANNEIPKLEPKQILPVLNGQVLNQKTKAPPRYTKASLVKELERQGIGRPGT FASIIKNITSRSQVIEEKRKLIPGPLGEQTIAQLEGRFSFVQTQFTSSMERALDKIADGQSTYNAVVSKFYEHLQRELSS LKDAPSLRMQSARTSASTTTGPEHQYLCGKCGKHLVRRQKRGEGGYDFWACSGYKDTGCKVSYPSVKEKPDLTKARGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topA | AAP84217.1 | topoisomerase I | Not tested | PAPI-1 | Protein | 2e-179 | 56 |
| unnamed | ABR13436.1 | DNA topoisomerase I | Not tested | PAGI-5 | Protein | 0.0 | 56 |
| topA | ADI24145.1 | DNA topoisomerase I | Not tested | AbaR1 | Protein | 5e-111 | 46 |
| top | ACP28824.1 | DNA topoisomerase I | Not tested | AbaR5 | Protein | 7e-111 | 46 |
