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Name : dnaB_1 (PFL_4663) Accession : YP_261746.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 5382535 - 5383884 bp Length : 1350 bp Strand : + Note : identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 DNA sequence : GTGAACCCTCTCGACTTTACGCCGCCTCATTCGACAGAAGCCGAACAGGGTGTCCTGGGCGGTCTGATGCTCGACAACAA TACATGGGATCTCATTGCCGACCTGCTTGTGCCTGAAGACTTCTTCAAACGTGAGCATCGGTTGATTTTCCAGGCCATAG CCTCACTAGCCGATAAGGATCATCCATTCGATATCGTGACGGTATCCGAGTCGATGTCTCAACCAGAGGAAGTTGGTGGC CTGGCCTACCTTGGAGATCTCGCAAGAAATACTCCATCTGTGGCCAACATCGAACGCTACGCAGAAATCGTTCGGAACAG GTCTCACCTGCGCAGCCTCATGTCCCTCGGCTACCAATGCTCTCGCGACGCCGCTGAAAGCACGGCAGTAGCTACTGACG TCCAGGAATCGATCGAGCAGCAACTCTTTGCACTCGCTCAGAACAGAACACGCTCCGACTTCGTCGACGTCAACCAAGCC CTCGGGGCGGTGATCAACAAGATTGACGAGCATTTCAACGGGAATGTGACTGTGACCGGAGTGTCGTCCGGAATCGACGA TCTTGACGAGATGACCTCAGGTTTTCAACCGACCGACCTCATCATTCTTGCCGGCAGGCCGTCGATGGGAAAAACGGCTC TAGCGTTAAAGTTCGTCCACGCAGCTTTACGTCAATGCTCAGACAATGAATCGGTCCAGGTCTACAGCATCGAAATGCCG GCCCAGGCCCTGCTATTTCGTTTGATCTCCAGCATTGGCCACGTAGATCTGACCAAGCTCTTAAAGGGGAAGCTTGAGGA TGAGGATTGGCCGAAGCTAACAAATGCAGTCCATCAGCTTAATGGCTTCGGGGATAGGCTGGTAATTGATGACGGTAGCT CACTGACCCCAGCTGCGCTGCGGGCAAAGGCCAGGAGGGCAAGCCGGCGCTTCGGCAAGCCAAAGCTGATCCTCATCGAC TACCTGCAGCTAATGAGCGCGGTAGGTGAGGAAAACAGGAACAACGAAATCAGTGTGATTTCTCGTTCATTGAAAGCGCT TGGCAAAGAAATGGACTGCCCAGTTATTGCCCTCTCTCAACTCAACCGGAGTGTTGAGGGACGTCCCAATAAACGCCCAG TCAACGCTGATTTGCGCGAAAGCGGTGCTATTGAACAAGACGCTGACGTGATCATGTTCGTTTACCGAGATGAGTATTAC CACCCGGAGTCCGAGCATAAAGGCATCGCCGAAATCATCATCGGCAAACAACGCCAGGGACCGGTCGGTTTTGCACGGGC GGCTTTCATCCCACAGCAGACTCGCTTCGAAAACCTGGCCCCTGCCAGTTGGCAAGGAGGCGGTGCATGA Protein sequence : MNPLDFTPPHSTEAEQGVLGGLMLDNNTWDLIADLLVPEDFFKREHRLIFQAIASLADKDHPFDIVTVSESMSQPEEVGG LAYLGDLARNTPSVANIERYAEIVRNRSHLRSLMSLGYQCSRDAAESTAVATDVQESIEQQLFALAQNRTRSDFVDVNQA LGAVINKIDEHFNGNVTVTGVSSGIDDLDEMTSGFQPTDLIILAGRPSMGKTALALKFVHAALRQCSDNESVQVYSIEMP AQALLFRLISSIGHVDLTKLLKGKLEDEDWPKLTNAVHQLNGFGDRLVIDDGSSLTPAALRAKARRASRRFGKPKLILID YLQLMSAVGEENRNNEISVISRSLKALGKEMDCPVIALSQLNRSVEGRPNKRPVNADLRESGAIEQDADVIMFVYRDEYY HPESEHKGIAEIIIGKQRQGPVGFARAAFIPQQTRFENLAPASWQGGGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 4e-145 | 66 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 1e-135 | 64 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-88 | 51 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 1e-88 | 51 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 1e-94 | 50 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 6e-95 | 50 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 3e-97 | 50 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 2e-91 | 49 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 4e-71 | 44 |
