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Name : kdpA_2 (PFL_4573) Accession : YP_261657.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : potassium-transporting ATPase subunit A Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2060 EC number : 3.6.3.12 Position : 5283950 - 5285656 bp Length : 1707 bp Strand : - Note : identified by match to protein family HMM PF03814; match to protein family HMM TIGR00680 DNA sequence : ATGTTGAGTACTGTGCTGGAATACGCGGTGATCCTCGGCCTGATGACCGGGCTGGCCGCGCTGATGGGCCAATGGCTGGC CCGGGTCTTCAGCGGCCGTGGCCACGCCTTGCCGGAGCGTGCCACCTACCGCCTGCTGGGGATCGACCCGGCTGAAACCA TGGGCTGGGCCCGCTATGGCTCGGCCCTGCTGCTGTCTAATGCGGCGATGATGCTGCTGGGCTACCTGCTGCTGCGCCTG CAAGGCAGCACACCGCTCAACCCCCTGGGGCTGGCGGCGCAGACCCCGGACCTGGCGTTCAACACCGCCGCGTCCTTTAT CACCAACACCAACTGGCAGGCGTACTCAGGTGAAAGCAGCCTGTCGAACTTCAGCCAGATGGCAGTGATCACCTTCCTGA TGTTCGTCGGCGCCACCGCCGGCGTGGTGGCGGCAGCCGGTTTCATTCGTGGGCTGAGCCGTTCCAGCTCGGCGGACCTG GGCAACTACTGGGTCGACTTCACCCGCACCCTGTACCGGGTGATGCTGCCTTTGTGCCTGATCATGGCCCTGGTCTATGT CTGGCAGGGCATGCCCCAGACCCTCAACTCACAGGCCCTGGCCACCACCCTGGAAGGCGCCCAGCAGCAACTGATCGTCG GCGCCGTGGCCAGTTTCGAGTCGATCAAGCACATCGGCACCAACGGTGGCGGCTTCTTCAGCATGAACGCGGCCCACCCG TTCGAGAACCCGACGCCGCTGACCAACGTCCTGCACATCCTCAGCATGTTGCTGATCCCTTCGGCCCTGACCTATGCCTT CGGCAGCATGCTGCTGCGTCGGCGTCAGGGCTGGGTGTTCTTCGGCACTTTCCTGGTGATGTTCGTCGGCTTCCTGGCGA TTGTCTTCACCGCGGAGCAGGGCGGTAACCCGCTGCTGACCCAGGCCGGTGCCGACCAGCAGATGTCGGAGACCCAGAGC GGCGGCAACATGGAAGGCAAGGAGCTGCGCTTCGGCATTGCCGACACCGCGCTGTTCGTCACCACCACCACCGGCGCCAC CACCGGTTCGGTGAATGCCATGCACGACTCGCTGACCCCCATGGGCGGCTTCGTGCCCCTGGCGCAGATGATGCTCAACT GTGTGTTCGGCGGCGACGGCGTGGGCTTTATCAACCTGATCCAGTACGCCCTGCTGACGGTGTTCCTGGTGGGCATGATG ATCGGCCGCAGCCCTGAGTTCCTCGGCAAGAAGATCGAGGCCCGGGAGATCAAGCTGGTGATGCTCTCGGTGCTCGCGCA CCCGATCTGCATCCTCGGTTTCACCGCCCTGGCGGCACTGTGGCCGGGCACTCTCAATAGTCTCAACAATCTGGGCCCCC ATGGCTTCAGCGAGGTGCTCTACGCCTACGCCTCGGGCACCGCCAACAACGGTTCGGCGTTTGCCGGCCTGAACGCCAAT ACACCGTTCTTCAACACCACCATTGGCCTGGCGATGCTCATGGGGCGCTTCTTCACCATGCTGCCGATGCTGGCCGTGGC CGGTTCCCTGGCGGCGAAAAAGAACATCCCGGCCGGTGCCGGCACCATTCCCACCGCCACGCCGCTGTTCATGTTGCTGG TGGTGTTCGTGGTGCTGGTGGTCGGTGGCCTGACTTTCCTGCCGGCCCTCGCGCTCGGCCCGCTGGTGGAGCAACTGCAG TTGCTCGCCGGCCAGACCTACAAGTAA Protein sequence : MLSTVLEYAVILGLMTGLAALMGQWLARVFSGRGHALPERATYRLLGIDPAETMGWARYGSALLLSNAAMMLLGYLLLRL QGSTPLNPLGLAAQTPDLAFNTAASFITNTNWQAYSGESSLSNFSQMAVITFLMFVGATAGVVAAAGFIRGLSRSSSADL GNYWVDFTRTLYRVMLPLCLIMALVYVWQGMPQTLNSQALATTLEGAQQQLIVGAVASFESIKHIGTNGGGFFSMNAAHP FENPTPLTNVLHILSMLLIPSALTYAFGSMLLRRRQGWVFFGTFLVMFVGFLAIVFTAEQGGNPLLTQAGADQQMSETQS GGNMEGKELRFGIADTALFVTTTTGATTGSVNAMHDSLTPMGGFVPLAQMMLNCVFGGDGVGFINLIQYALLTVFLVGMM IGRSPEFLGKKIEAREIKLVMLSVLAHPICILGFTALAALWPGTLNSLNNLGPHGFSEVLYAYASGTANNGSAFAGLNAN TPFFNTTIGLAMLMGRFFTMLPMLAVAGSLAAKKNIPAGAGTIPTATPLFMLLVVFVVLVVGGLTFLPALALGPLVEQLQ LLAGQTYK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | BAB43902.1 | potassium-transporting ATPase(A chain) | Not tested | Type-II SCCmec | Protein | 3e-79 | 47 |
| kdpA | YP_251948.1 | potassium-transporting ATPase subunit A | Not tested | SCCmec | Protein | 7e-79 | 47 |
| SAR0070 | YP_039538.1 | potassium-transporting ATPase subunit A | Not tested | Type-II SCCmec | Protein | 4e-79 | 47 |
| truncated-kdpA | NP_370596.1 | potassium-transporting ATPase subunit A | Not tested | Type-II SCCmec | Protein | 4e-79 | 47 |
| kdpA | NP_373308.2 | potassium-transporting ATPase subunit A | Not tested | Type-II SCCmec | Protein | 4e-79 | 47 |
| kdpA | YP_190030.1 | potassium-transporting ATPase subunit A | Not tested | Type-II SCCmec | Protein | 4e-79 | 47 |
| ef0087 | AAM75290.1 | EF0087 | Not tested | Not named | Protein | 1e-62 | 42 |
| kdpA | NP_814333.1 | potassium-transporting ATPase subunit A | Not tested | Not named | Protein | 1e-62 | 42 |
