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Name : wbpM (PFL_4305) Accession : YP_261397.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : nucleotide sugar epimerase/dehydratase WbpM Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 5001557 - 5003551 bp Length : 1995 bp Strand : - Note : identified by similarity to GB:AAF72960.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM DNA sequence : ATGGATAAGATACGAACACTTCTGTTGAGGCTCCCGCGGCGGCAGAAGAGGGTGCTGCAGGTGGTCACCGACATTTTGCT GGTGTGGGTCGCTCTATGGATGGCATTTGTCGTCAGGTTGGGTTTTGACGATCTGAACAATCCTTTCATTGTGCATTTCT GGCTATTCGCCAGCGCTCCTATAGTTGCCATTCCTCTGTTCATTCGGTTCGGGATGTATCGCGCCGTCATGCGTTACTTC GGTAACGATGCTCTTATTGCTATCGTCAAGGCCGTAACCCTGTCGGCTTTGACTCTCGCGCTGGTGGTCTATGTGTATAG CAATCACCAGACCGTGGTGCCGCGCTCAATCGTATTCAACTATTGGTGGTTGAGTATGGTGATGATTGGCGGACTTAGGC TGGCGATGCGTCAGTACTTTCTTGGTGACTGGTTCACCACCGCCCAGCATGTACCCTTTACCAATCGTGATGATGGTTTG CCTAAGGTGGCTATCTACGGTGCTGGAGCGGCAGGCAATCAACTGGTGGCGGCGTTGCGATTGGGGCGGTTGATGCGTCC TGTGGCCTTTATCGATGATGACGGCAGTATTGCTGATCGGATGATCGCCGGGCTGCAGGTGTATAAACCCAAGCATTTGC AGCAAATGATTGATGACACGGGGGCAGAAGAGATTCTCCTGGCCATTCCCTCATCCAGTCGTAGCCGTCGAAGAGAAATT CTGGGGTATTTGGAAGGATTCCCCTTACATGTACGAAGTGTTCCCGGTTTCATGGATCTGGCCAGTGGCCGAGTGAAAGT CGATGACATTCAAGAGGTGGACATAGCTGACCTGCTTGGGCGTGACGCGGTCCCGGCTCAAGTTGACCTGTTGGCCCACT GTATCAAGGGGCAGACAGTTCTGGTGACAGGTGCTGGAGGGTCTATCGGTTCTGAGCTTTGTCGGCAGATTCTGCTCCAG GGCCCTAGCACGCTAATATTGCTCGATCACAGTGAGTTCAATCTTTACAGTATCTTGTCCGAACTTGAACAGCGGGTATC GAGAGAGTCTCGGCTTGTAAAACTATTGCCAATTCTTGGTTCGGTACGCAACTACGAAAAGTTGTTGTCAGTCATGAGAA CCTGGAGCGTAGATACGGTTTATCACGCCGCTGCATATAAGCATGTTCCGATGGTAGAGCATAATATCGCTGAAGGTGTA CTTAATAATGTCATGGGGACGCTCAATACCGCTCAGGCTGCACTGCAATGTGGTGTAGCAAACTTTGTATTGATTTCTAC GGATAAGGCGGTTCGCCCAACCAATGTCATGGGTAGCACCAAACGACTGGCGGAGCTTACGTTGCAGGCGTTGAGCAAGG AACTGGCTCCGGTTCTGTTCGATGATTTGTCAAATGTGTCACGGGTTAATAAAACTCGTTTCACCATGGTCCGTTTCGGG AATGTACTGGGCTCTTCAGGTTCGGTTATTCCGCTATTCCATAAGCAGATCAAGTCTGGTGGCCCGTTGACGGTCACGCA TCCCAAGATCACCCGTTATTTCATGACCATCCCAGAGGCTGCCCAATTGGTCATTCAGGCAGGTTCGATGGGGCAGGGCG GGGACGTATTTGTATTGGATATGGGCGAGCCAGTCAGAATTGTCGAGCTGGCAGAAAAAATGATTCATCTTTCCGGGCTG AGTGTTCGCTCGGAGAAAAATCCTCATGGTGATATCGCGATTGAATTTACTGGCTTGCGGCCTGGTGAAAAGCTTTACGA AGAGTTGCTGATTGGAGACAACGTCGCCGCTACTCAGCACCCGATGATCATGAGTGCCAACGAGGATCATCTACCGTGGG AAACACTCAAGCTGAAGCTCGCTGAACTCCTTGCAGCACTTGAGTTGGACGACTATGCAAGAGTTCGCCAGTTGCTTCGC GAGACCGTAAGTGGCTACACACCGGATGGTGAAATCGTCGACTGGGTCTATCAGCAGCGTCGTCTCAAACCTTGA Protein sequence : MDKIRTLLLRLPRRQKRVLQVVTDILLVWVALWMAFVVRLGFDDLNNPFIVHFWLFASAPIVAIPLFIRFGMYRAVMRYF GNDALIAIVKAVTLSALTLALVVYVYSNHQTVVPRSIVFNYWWLSMVMIGGLRLAMRQYFLGDWFTTAQHVPFTNRDDGL PKVAIYGAGAAGNQLVAALRLGRLMRPVAFIDDDGSIADRMIAGLQVYKPKHLQQMIDDTGAEEILLAIPSSSRSRRREI LGYLEGFPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPAQVDLLAHCIKGQTVLVTGAGGSIGSELCRQILLQ GPSTLILLDHSEFNLYSILSELEQRVSRESRLVKLLPILGSVRNYEKLLSVMRTWSVDTVYHAAAYKHVPMVEHNIAEGV LNNVMGTLNTAQAALQCGVANFVLISTDKAVRPTNVMGSTKRLAELTLQALSKELAPVLFDDLSNVSRVNKTRFTMVRFG NVLGSSGSVIPLFHKQIKSGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDMGEPVRIVELAEKMIHLSGL SVRSEKNPHGDIAIEFTGLRPGEKLYEELLIGDNVAATQHPMIMSANEDHLPWETLKLKLAELLAALELDDYARVRQLLR ETVSGYTPDGEIVDWVYQQRRLKP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-76 | 43 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-72 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| wbpM | YP_261397.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG0029 | Protein | 4e-115 | 47 |
