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Name : kdpB_1 (PFL_4296) Accession : YP_261388.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : potassium-transporting ATPase subunit B Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : 3.6.3.12 Position : 4991879 - 4993963 bp Length : 2085 bp Strand : - Note : identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497 DNA sequence : ATGAATATGCATGTTCCTGCCTCGAACAAAGCCGCCGATGCGCTCGCCAAGAGCCAGCCGGCCAAGGCCGAAGTGGCGAG TACCGCAATCTCTGCCCTGTGGCGCCCGGCGCTGATCCAGGCTTTCGTCAAGCTTGACCCGCGCCAGTTGCAGCGCTCGC CAGTGATGCTGGTGGTGGAACTGACAGCGATCCTGACCACCGTGCTGTGTTTCATTCCGGACACCGCAGTGCCGACCTTC GTCGCCGCCCAGATTGCTCTCTGGCTGTGGTTCACGGTGCTCTTTGCCAACTTCGCCGAGGCCCTGGCGGAAGGCCGCGG CAAGGCTCGCGCCGACAGCCTCAAGGCCGGTAGCGAGGGCTTGAGCGCCCGCCGCCGGGCCGGCGACGGCAGCTATCAGC TGGTGCCGGCGGTCAATCTGCGCAAAGGCGACGTGGTGCGGGTCGAAGCCGGCGAAATGATTCCCGGCGATGGCGAGGTG ATCGAAGGTATCGCCGCGGTCAACGAAGCGGCAATCACCGGTGAATCGGCTCCGGTGATCCGGGAATCCGGCGGTGACCG TTCGGCGGTGACCGGCAATACCCGGCTGGTCTCCGACTGGCTGCTGGTGCGCATTACCAGCAACCCCGGCGAGTCGACCC TGGACCGCATGATCGCTCTGGTGGAAGGTGCCAAGCGGCAGAAGACACCGAACGAAGTGGCCCTGGATATCCTGCTGATC GGCCTGACCCTGATCTTCCTGCTGGTGGTGGTGACCCTGCAGCCCTTCGCCCACTTTGCCAATGGCAGCCTGCCGCTGGT GTTCCTGGTGGCGCTGCTGGTGACCCTGATCCCCACCACCATCGGCGGCCTGCTCTCGGCCATCGGGATCGCCGGGATGG ACCGCCTGGTGCGCTTGAACGTGATCGCCAAGTCCGGGCGTGCGGTGGAGGCGGCGGGTGACGTGCACGTGTTGCTGCTG GACAAGACCGGCACCATCACTTTCGGTAACCGCCGTTGCAGCGCCATCTACCCGGCGCCGGGCGTCAGTGCCCAGGTACT GGCCGAAGCGGCCTTGATGGCCTCCCTGGCGGACGACACCGCTGAAGGCAAGTCCATCGTCGAGTACCTGCGGGAGCTTT ATCCACAGCCCGAGCCGGGCAGCGATCTGCTGACGGCAGTGCCTTTCAGCGCTGAAACCCGACTGTCCGGGGTCGATTAC CAGGGCCGGGTCTATCGCAAGGGTGCAGTGGATTCGGTGTTGAGTTTCGTCGGCCTCAAACGCAGCGAGCTGGCACCGGC CCTGTCCCGGGAGATCGACAAGATCGCCCAGAGCGGCGGCACTCCGCTGCTGGTCTGTGCCGAGGGCCGGATGCTCGGCG CCATTCACCTCAAGGACGTGGTCAAGCCCGGCATTCGCGAGCGTTTCGCCGAGTTGCGCAAGCTGGGTATCCGTACCGTG ATGGTGACCGGCGACAACCCGCTGACCGCTGCGGCCATTGCCGCCGAAGCCGGAGTCGACGATGTGCTGGCCGAGGCCAC GCCGGAGAAGAAGCTGGCGCGCATTCGCCACGAGCAAAACGACGGGCGTCTGGTGGCCATGTGCGGTGACGGCGCCAACG ACGCACCGGCATTGGCCCAGGCCGATGTCGGCATGGCCATGAACGACGGCACCCAGGCGGCGCGCGAGGCGGCCAACATG GTCGACCTGGACAGCGACCCGACCAAGCTGCTGGATGTGGTGCAGATCGGCAAGGAGCTGCTGGTGACCCGGGGTGCCCT GACCACCTTCTCCATCGCCAACGACGTGGCCAAGTACTTCGCCATCCTGCCGGCACTGTTCGCGGCGATTTATCCACAGC TGGGGGTGCTCAACATCATGGGGCTGGCCAGCCCGCAGAGCGCAATCCTTTCGGCCATCGTGTTCAACGCCCTGATCATC GTGGTGCTGATCCCCCTGGCATTGCGTGGGGTGCGGGTACAGGCGGCCAGTGCCGCGCACCTGCTGCGGCGCAACCTGTT GATCTACGGCGTGGGTGGCATCGTCGTGCCCTTTGTCGGGATCAAGCTGATCGACATGCTGTTGACTGCGCTGCACCTGG TGTAA Protein sequence : MNMHVPASNKAADALAKSQPAKAEVASTAISALWRPALIQAFVKLDPRQLQRSPVMLVVELTAILTTVLCFIPDTAVPTF VAAQIALWLWFTVLFANFAEALAEGRGKARADSLKAGSEGLSARRRAGDGSYQLVPAVNLRKGDVVRVEAGEMIPGDGEV IEGIAAVNEAAITGESAPVIRESGGDRSAVTGNTRLVSDWLLVRITSNPGESTLDRMIALVEGAKRQKTPNEVALDILLI GLTLIFLLVVVTLQPFAHFANGSLPLVFLVALLVTLIPTTIGGLLSAIGIAGMDRLVRLNVIAKSGRAVEAAGDVHVLLL DKTGTITFGNRRCSAIYPAPGVSAQVLAEAALMASLADDTAEGKSIVEYLRELYPQPEPGSDLLTAVPFSAETRLSGVDY QGRVYRKGAVDSVLSFVGLKRSELAPALSREIDKIAQSGGTPLLVCAEGRMLGAIHLKDVVKPGIRERFAELRKLGIRTV MVTGDNPLTAAAIAAEAGVDDVLAEATPEKKLARIRHEQNDGRLVAMCGDGANDAPALAQADVGMAMNDGTQAAREAANM VDLDSDPTKLLDVVQIGKELLVTRGALTTFSIANDVAKYFAILPALFAAIYPQLGVLNIMGLASPQSAILSAIVFNALII VVLIPLALRGVRVQAASAAHLLRRNLLIYGVGGIVVPFVGIKLIDMLLTALHLV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 1e-151 | 60 |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 1e-151 | 60 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 9e-124 | 56 |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-122 | 55 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-122 | 55 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-122 | 55 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-122 | 55 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 2e-122 | 55 |
