Gene Information

Name : PFL_4247 (PFL_4247)
Accession : YP_261339.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Unknown
Product : aminotransferase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0436
EC number : 2.6.1.-
Position : 4943210 - 4944421 bp
Length : 1212 bp
Strand : +
Note : identified by match to protein family HMM PF00155

DNA sequence :
ATGCAGGTCAGCAAATCGAACAAGCTCGCCAACGTCTGTTATGACATTCGCGGCCCAGTGCTCAAGCACGCCAAACGTCT
GGAAGAGGAAGGCCACCGCATCCTCAAGCTGAATATCGGCAACCCGGCGCCCTTTGGTTTCGAAGCGCCGGACGAAATTC
TCCAGGACGTGATCCGCAACCTGCCCACTGCCCAGGGCTACAGCGACTCCAAGGGCCTGTTCAGTGCCCGCAAGGCGGTG
ATGCAGTACTACCAGCAGAAGCAGGTGGAAGGCATCGGTATCGAAGACATCTACCTGGGCAACGGTGTTTCCGAGCTGAT
CGTGATGGCCATGCAGGCCCTGCTCAACAACGGCGACGAAGTGCTGGTACCGGCCCCCGACTACCCGCTGTGGACCGCCG
CGGTGAGCCTGGCCGGCGGCAACCCGGTGCACTACCTGTGCGACGAGCAGGCCAACTGGTGGCCGGACCTGGCCGACATC
AAGGCCAAGATCACCCCGAACACCAAGGCCCTGGTGATCATCAACCCGAACAACCCCACCGGCGCCGTCTACCCCAGGGA
AGTACTGCTGGGCATGCTGGAGCTGGCCCGCCAGCACAACCTGGTGGTGTTCTCGGACGAGATCTACGACAAGATCCTCT
ACGATGACGCCGTGCACATCTGCACCGCCTCGCTGGCCCCGGACCTGCTGTGCCTGACCTTCAACGGCCTGTCCAAGTCC
TATCGGGTAGCCGGTTTTCGTTCCGGCTGGGTGGCCATTTCCGGTCCCAAGCAGCACGCCCAGAGCTACATCGAAGGCAT
CGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCCAGCCAGCACGCCATCCAGACCGCCCTGGGCGGCTACCAGA
GCATCAACGATCTGGTGCTGCCCCCGGGCCGCCTGCTGGAACAGCGCAACCGCACCTGGGAACTGCTCAACGACATTCCC
GGGGTCAGTTGCGTCAAGCCCATGGGCGCGCTGTATGCCTTCCCGCGGATCGACCCGAAGATCTGCCCGATCCACAACGA
CGAGAAGTTCGTCCTCGACCTGCTGCTCTCGGAAAAGCTCCTGGTGGTGCAAGGCACGGCCTTCAACTGGCCATGGCCGG
ATCACTTCCGCGTCGTGACCCTGCCGCGGGTGGATGACCTGGAGCAGGCCATTGGTCGGATCGGCAGCTTCCTCAAGTCC
TACCGCCAGTAA

Protein sequence :
MQVSKSNKLANVCYDIRGPVLKHAKRLEEEGHRILKLNIGNPAPFGFEAPDEILQDVIRNLPTAQGYSDSKGLFSARKAV
MQYYQQKQVEGIGIEDIYLGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLAGGNPVHYLCDEQANWWPDLADI
KAKITPNTKALVIINPNNPTGAVYPREVLLGMLELARQHNLVVFSDEIYDKILYDDAVHICTASLAPDLLCLTFNGLSKS
YRVAGFRSGWVAISGPKQHAQSYIEGIDMLANMRLCANVPSQHAIQTALGGYQSINDLVLPPGRLLEQRNRTWELLNDIP
GVSCVKPMGALYAFPRIDPKICPIHNDEKFVLDLLLSEKLLVVQGTAFNWPWPDHFRVVTLPRVDDLEQAIGRIGSFLKS
YRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aspC YP_005682179.1 Aminotransferase AlaT Not tested PiCp 7 Protein 6e-123 63
aspC YP_005684271.1 Aminotransferase AlaT Not tested PiCp 7 Protein 6e-123 63
aspC YP_003784329.1 aspartate aminotransferase Not tested PiCp 7 Protein 6e-123 63
aspC YP_005686363.1 Aminotransferase AlaT Not tested PiCp 7 Protein 6e-123 63