Gene Information

Name : PFL_4181 (PFL_4181)
Accession : YP_261273.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4854154 - 4854831 bp
Length : 678 bp
Strand : -
Note : identified by similarity to SP:P52076; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCACGTACTTGTCTGTGAAGATGATGAGCTGATTGCCAGCGGGATAGTCGCCGGCCTCACGGCCCAGGGCCTGACGGT
CGAGCATGTGGCCACCGCTTCGGCAGCGCGGGCCATGCTCGGCGTGGCCGATTTCGACGTGATGGTACTGGATCTTGGCC
TTCCGGATGAAGACGGTTTGAAGCTGCTCAAGCAGCAGCGCCAGCAGGGCCTGGAGATTCCGGTGCTGATCCTCACCGCC
CGCGACTCGGTGACCGACCGGGTCGATGGCTTGCAGGCCGGTGCCGACGATTACCTGCTCAAGCCCTTCGACCTGCGGGA
ACTGGCGGCGCGCCTGCACACCCTGTTGCGCCGGGTGGCGGGGCGCAGCGTCAACCTGATCGAGCACGGGCGCTTGACCT
ATGACCCGAGCACCCGGGAAACCCTGCTCGGCGGCCAACCGGTGGACCTCTCGCGGCGCGAGCAATCCCTGCTCCAGGCG
CTGCTGCACAACCGTGGCCGGGTGCTGTCCAGCGAGCAACTCAAGGACAGCGTCTACGGTTTCAACGATGAGCTGGAGAG
CAACGCGCTGAATGTGCACATCCACCACCTGCGGCGCAAACTCGGCAACGGCATCGTCGAAACCGTGCGCGGCCTCGGCT
ATCGCCTGGGCCCGGCCGACGGTGAGGAGAACCGCTAA

Protein sequence : 
MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMLGVADFDVMVLDLGLPDEDGLKLLKQQRQQGLEIPVLILTA
RDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAGRSVNLIEHGRLTYDPSTRETLLGGQPVDLSRREQSLLQA
LLHNRGRVLSSEQLKDSVYGFNDELESNALNVHIHHLRRKLGNGIVETVRGLGYRLGPADGEENR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 6e-50 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_4181 YP_261273.1 DNA-binding response regulator BAC0487 Protein 1e-34 44
PFL_4181 YP_261273.1 DNA-binding response regulator NC_002516.2.879194.p Protein 4e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_4181 YP_261273.1 DNA-binding response regulator VFG1389 Protein 1e-24 44
PFL_4181 YP_261273.1 DNA-binding response regulator VFG0473 Protein 1e-36 43
PFL_4181 YP_261273.1 DNA-binding response regulator VFG1390 Protein 1e-26 41