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Name : PFL_3921 (PFL_3921) Accession : YP_261021.2 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : sensor histidine kinase/response regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0642 EC number : - Position : 4525384 - 4528557 bp Length : 3174 bp Strand : + Note : identified by similarity to SP:P14376; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 DNA sequence : ATGCCACATCCCAACGCCTTTCTGGAGAAACTCGCCAGCAGTTCATCGCGCCTGAACAAGAGCCTGCTGGTGCTCGGCGC CCTGGTGTTGCTGTTGCTGGGTATCAGCTATGTGGGTGTGACGCGCATGATCGAAGAGCGGCGCGAAACCTTGCAATTTC ACTTTGCCCGGCTGATGGAGAATGTCCACGAACAGGAAGTGTTCCTGCAGGATATTGCCCGGGAAAGCGCCAAGGGCGAA CGGCTGCCCAATGCCATGTTGCCCCCCTACTCACAAAAACCCCTGCCCGATGAAGGGCCGAACATTTACGAAGGCCGCGG CCTGCCGTTTTCGCTGCCCTATAGCTTGAAGATCAATACGGACAGGATTGCCCCCAGCCAATACCCGAAAATCTTTGCGC TGGGTACCCATCTGGCGGCCTATTACAGCGCGTTCTGGTCGGCCTCGCACTATCAGTCTCCGCAGGTTGTCCTGATCAAT GGCCCCGACAATTTTGACCTGGCCGTACCCTCCGTCGGGCGTTTGCGCGGTACGGGGCAATTACCGATGCAGACGGGCCA TCTGGTCGATGTGATGACCCAGGTGAACAAACGCCTGCGCGGGCACAACTCGCCATTGCCAGATCTTCAGGTGCGCTGGG AACCCTATGTCTCTTCCGAGGACGACAAGAGCGCGCCCACCCTGCTGGCTTACGTGAGTATCAACCTGGCGAAAACCGCA TTGACCGTCGAGGGCGCCGATACCTGGGTGGTACTGGGCTCGCTGATGAACCTGTCCCAGGTCAACAACATCGAACGGCT GATGCAGTGGTCGATCTACGATGACTTCACCTTGATCACCCCCCGTGGCGTGGTATTGACCGGTGCTCTGAAACCCGGCC AGGTGCTGGATGAAGGGGTGAATTTCAACCGCGACGGCCTGGTGTTCAAACTGAGCAGCCCCGGGGAGCAACACTGGACG GCGATCTACGTCATCAGCCTGCGCAGTTTCCTCGACTACGCGCTGTGGCCATTGCTGTGCCTGGTTGCTCTGGCGCTTGC GCTACTCGGTTGCAGTCGGGCGGTCAATCGCTGGTACCAGGCCCGGGTCATCCTGCCCGCGCAGAGGGCGCACGCCAGCA TTGCCGAAAGCGAGGCGTTCAGCCGCACGGTGATCGATACGGCGCCGACCGGCCTGTGCGTGATTCGCCGCAGCGATCAC CACGTCCTACTGGAAAACCAGCGCGCCCAGCAATGGCACGATAACGGCCAACTGATGAGCTTGCTCACACCCCTTACGGG CCCCGGTCACGCCGATCTTGAAATCAATGGGCGCCACCTGCACGTCGCCTTTGTGCCCACCCGCTATCAGGGCCAGGACG CCTGGTTATGTGCGTTGCATGACGTGACCCGGCATGTCGAAGATGCGGCGGCGCTGGAAGAAGCGCGCCAGGCCGCCGAC TCGGCAAACCAGGCCAAGAGCCGCTTCCTCGCTACCATGAGCCACGAGATCCGCACTCCCCTGTACGGCGTGCTGGGAAC TCTGGAGCTGCTCGGCCTGACCTCGCTCGCCCCGCGCCAGCAGGATTACCTGCACACCATCCAGCGCTCCTCCGCCACGT TGTTCCAACTGATCAGCGATGTGCTGGATGTGTCGAAAATCGAAGCCGGACAGATGACCCTCGAACTTCAGGATTTCTGC CCGCTGCAACTGACCGAAGACACCGTGCGCACCTACAGCGCCTTCGCCCGATCCAAGGGCCTGCTGCTCTATGCCTGCAT CGACCCGGCTCTGCCGGACCGGTTGCGCGGTGACCCGATACGGATTCGCCAGATCCTCAACAACCTGCTGAGCAACGCCA TCAAGTTCACCGATAACGGTCGCGTAGTGCTGCGGGTTCAGTTGCTGGAAAGCGACGATGGCCGCGCCCACGTGCAGTGG CAGGTCAGCGATTCGGGAGGAGGAATTTCCCTGGCGCAACAGCAACAACTGTTCGACCCTTTCTATCAGGTCAACGATGC CACTGAACAGGCCGGTGCCGGATTGGGACTGGCCATTTGCAAATGGCTGTGCGAGTTGATGGCGGGCCAGTTGAACCTAG TCAGCGAGCCCGGGCTCGGCAGCAGTTTCACCCTTCAACTCGCACTGGAACACGCACCCGGTGAGCTGGCCGACTGCCCT GTGTTCAGCCCCGGCAGCAGCACCGTCTATGTGCGTGCGCAGGTCACTGAGCAGGCACAACACCTGATCGCCTGGCTCAA CCGTTTTGGCCTCGACTGCCGCCCGCTGAGGCCCGATACACCGGTGTCATCGGCACTGCTGGTAGAGCTTTCCCCCCTGG CCGATACCGCGGCCTGGCCCGGTCCGAAGGTCGTCGCCAGGGCGGATGGCCCCAACCCTGCGCAATTGCGCGGTACCGAC CGAGAAGTCGACGCCCATGATGTCCGCGCGATCGCCTGGGCGATTTACCAGGCCCAGCACGGCGTCAGCGCCGACAGCCA ACCTTCGTCGCCGGAAAAGCCCCGGCAGTTGAATCTGCAAGTGCTGGTGGCGGAAGACAATGTGATCAACTCGGCGATCA TCAAGGAGCAACTGGAAGTGCTGGGCTGCTCGGTGGTCGTCGCGGCCAATGGCGAGCTGGCCCTGGCGCAGTGGTCGCCC GGACGCTTCGATCTGCTGCTGACCGACGTCAACATGCCGGTCATGAACGGCTACCAATTGGCCACGGCGTTACGGCTTCA GGATCAGACGCTGCCGATTATCGGCGTCACCGCCAACGCCTTGCGCGAAGAAGGCGAGCGCTGCGCCGACGTCGGCATGA ACGCCTGGATGGTCAAGCCACTGAACCTCGCCACCCTGCGCGCGCACCTGGAAAGACATTGCAAAATCGCCCTGCCGGCG ACCAGCGTTGCCCCTCTAAAGCTGTCACCGAAAATGCGCGAACTCTTTGTCACGACGCTGCGCCAGGACATGCAGACCAC GCTGACGGCATTGGACAACGCCGATGCCCATCGCGTGGCGCAACAGCTGCACAGCATGGCCGGTGCATTGGGTGCGGTAC AGCTCGAAGAACTGGCCACAACCTTCGTCGAGCTGGAGTGCCGCCTGAACGGCCTGAGCTTGACCCACGCCCTGGACCTG GAGGTACGCCAGAATCTGGCTCGATTGAAAGACCTGCTGGGCACCCTTGAATAA Protein sequence : MPHPNAFLEKLASSSSRLNKSLLVLGALVLLLLGISYVGVTRMIEERRETLQFHFARLMENVHEQEVFLQDIARESAKGE RLPNAMLPPYSQKPLPDEGPNIYEGRGLPFSLPYSLKINTDRIAPSQYPKIFALGTHLAAYYSAFWSASHYQSPQVVLIN GPDNFDLAVPSVGRLRGTGQLPMQTGHLVDVMTQVNKRLRGHNSPLPDLQVRWEPYVSSEDDKSAPTLLAYVSINLAKTA LTVEGADTWVVLGSLMNLSQVNNIERLMQWSIYDDFTLITPRGVVLTGALKPGQVLDEGVNFNRDGLVFKLSSPGEQHWT AIYVISLRSFLDYALWPLLCLVALALALLGCSRAVNRWYQARVILPAQRAHASIAESEAFSRTVIDTAPTGLCVIRRSDH HVLLENQRAQQWHDNGQLMSLLTPLTGPGHADLEINGRHLHVAFVPTRYQGQDAWLCALHDVTRHVEDAAALEEARQAAD SANQAKSRFLATMSHEIRTPLYGVLGTLELLGLTSLAPRQQDYLHTIQRSSATLFQLISDVLDVSKIEAGQMTLELQDFC PLQLTEDTVRTYSAFARSKGLLLYACIDPALPDRLRGDPIRIRQILNNLLSNAIKFTDNGRVVLRVQLLESDDGRAHVQW QVSDSGGGISLAQQQQLFDPFYQVNDATEQAGAGLGLAICKWLCELMAGQLNLVSEPGLGSSFTLQLALEHAPGELADCP VFSPGSSTVYVRAQVTEQAQHLIAWLNRFGLDCRPLRPDTPVSSALLVELSPLADTAAWPGPKVVARADGPNPAQLRGTD REVDAHDVRAIAWAIYQAQHGVSADSQPSSPEKPRQLNLQVLVAEDNVINSAIIKEQLEVLGCSVVVAANGELALAQWSP GRFDLLLTDVNMPVMNGYQLATALRLQDQTLPIIGVTANALREEGERCADVGMNAWMVKPLNLATLRAHLERHCKIALPA TSVAPLKLSPKMRELFVTTLRQDMQTTLTALDNADAHRVAQQLHSMAGALGAVQLEELATTFVELECRLNGLSLTHALDL EVRQNLARLKDLLGTLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rcsC | AAP84165.1 | RcsC | Not tested | PAPI-1 | Protein | 1e-161 | 41 |
