Gene Information

Name : PFL_3852 (PFL_3852)
Accession : YP_260952.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4453738 - 4454400 bp
Length : 663 bp
Strand : +
Note : identified by similarity to SP:P52076; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCGCCTGCTGCTTGTCGAAGATGATCGTGCCCTCGGCCAGGGCATCCGCGTGGCCCTGAGCGCCGAAGGCTACACCCT
GGACTGGCTGCAGGACGGTGCCAGCGCCCTGCACGCCCTGCGCACCGAAAGCTTCGACCTGTTGCTGCTGGACCTGGGCC
TGCCGCGGCTCGACGGCCTCGAACTGCTGCAGCAATTGCGTGCCGCCCAGCAGGACCTGCCGGTGCTGATCCTCACCGCC
CGCGACGGCACCGCCGAACGCATCGCCGGGCTGGATGCCGGGGCCGACGACTACCTGGTCAAGCCCTTCGATGTCGAGGA
ATTCAAGGCCCGGGTCCGCGCCCTGCTGCGCCGCAGCCAGGGTCGTGCCCAGCCGCTGCTGGAACACGCCGGCATCCGCC
TCGACCCGGCCAACCAGCAGGTGCAGTACCAAGACAACGAAGTGGTGCTCACGCCCATGGAATACCAGCTGCTGCACCAG
CTGATGGTGCGCCCGGGCAAGGTGGTGACCCGCGAGCGCCTGTCCCGGGCGCTGTACGGCTGGCAGGACCGGGTCGAGAG
CAACACCCTGGAAGTACTGATCCATAACCTGCGCAAGAAGCTCTGCAGCGAGCTGATCCGCACCGTGCGCGGCGTCGGTT
ACGTGCTGGCGCTCAAGCCATGA

Protein sequence : 
MRLLLVEDDRALGQGIRVALSAEGYTLDWLQDGASALHALRTESFDLLLLDLGLPRLDGLELLQQLRAAQQDLPVLILTA
RDGTAERIAGLDAGADDYLVKPFDVEEFKARVRALLRRSQGRAQPLLEHAGIRLDPANQQVQYQDNEVVLTPMEYQLLHQ
LMVRPGKVVTRERLSRALYGWQDRVESNTLEVLIHNLRKKLCSELIRTVRGVGYVLALKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-29 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-19 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_3852 YP_260952.1 DNA-binding response regulator BAC0197 Protein 1e-28 42
PFL_3852 YP_260952.1 DNA-binding response regulator NC_002516.2.879194.p Protein 6e-24 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_3852 YP_260952.1 DNA-binding response regulator VFG0473 Protein 1e-33 48
PFL_3852 YP_260952.1 DNA-binding response regulator VFG1390 Protein 3e-28 46
PFL_3852 YP_260952.1 DNA-binding response regulator VFG0596 Protein 2e-19 41