Gene Information

Name : fepC (PFL_3622)
Accession : YP_260724.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : ferric enterobactin ABC transporter ATP-binding protein FepC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 4182668 - 4183459 bp
Length : 792 bp
Strand : -
Note : identified by similarity to SP:P23878; match to protein family HMM PF00005

DNA sequence : 
ATGACTCACCGTTTGCACGCCGATGCCGTGACCTTGCGCCACGACGCGCGAATCATTTCCCAAGGCCTGTCCCTGAGCAT
TCCCGACGGCTCGTTCACGGTCATTGTCGGGCCCAACGCCTGTGGCAAATCCACCTTGCTGGCGGCGTTGTCCCGGCTAC
TGGCACCGGCTGAAGGGCGGGTGGTGCTCGATGGCAAGGACATCCGCCAACTGCCGGCCCGGGAAGTGGCCCGGCGCCTG
GGCCTGCTGCCGCAAAGCGCCATGGCGCCGGATGGCATCAGCGTCGCCGAACTGGTGGCGCGCGGGCGCTATCCGCACCA
GTCGTTGCTGCGCCAGTGGTCGAAGGAGGATGAGCAGGCGGTGCGCGGGGCGATGGCCGCGACCCGGGTCGAGGCGCTGG
CCGAACGCTTGCTGGACGAGTTGTCCGGCGGCCAGCGCCAGCGGGTGTGGATCGCCATGGTGCTGGCCCAGGAAACGCCG
ATCCTGCTGCTGGACGAGCCCACCACCTACTTGGATATCGTCCATCAGATCGAGCTGCTGGAGCTTTTGGCCGAGCTCAA
CCGCCAGGGCCGGACCATCGTCGCGGTGCTGCATGACTTGAACCAGGCTTGCCGCTATGCCAGCCACCTGATCGCCCTGC
GCGACGGCGCCATCGTCGCCCAGGGCGCGCCGGCGGCGATCTTCACCGAGGCCCTGGTGGAGCAGGTGTTCGGCCTGGCC
TCGGTGATCATCCGCGACCCGGTCAGCGGCACGCCGTTGATGGTGCCCAAGGGCCGAATCGACCCGGCCTGA

Protein sequence : 
MTHRLHADAVTLRHDARIISQGLSLSIPDGSFTVIVGPNACGKSTLLAALSRLLAPAEGRVVLDGKDIRQLPAREVARRL
GLLPQSAMAPDGISVAELVARGRYPHQSLLRQWSKEDEQAVRGAMAATRVEALAERLLDELSGGQRQRVWIAMVLAQETP
ILLLDEPTTYLDIVHQIELLELLAELNRQGRTIVAVLHDLNQACRYASHLIALRDGAIVAQGAPAAIFTEALVEQVFGLA
SVIIRDPVSGTPLMVPKGRIDPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-58 55
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-60 52
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 5e-60 52
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 5e-60 52
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-60 52
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-52 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-59 49
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-59 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-47 45
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-46 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-46 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-46 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-46 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fepC YP_260724.1 ferric enterobactin ABC transporter ATP-binding protein FepC BAC0164 Protein 4e-52 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fepC YP_260724.1 ferric enterobactin ABC transporter ATP-binding protein FepC VFG0925 Protein 9e-73 63
fepC YP_260724.1 ferric enterobactin ABC transporter ATP-binding protein FepC VFG1042 Protein 4e-52 49