|
Name : PFL_3573 (PFL_3573) Accession : YP_260675.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : peptide ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 4119559 - 4121133 bp Length : 1575 bp Strand : + Note : identified by similarity to SP:P33916; match to protein family HMM PF00005; match to protein family HMM PF08352 DNA sequence : ATGACTGAAAACCTGATCGAAATCCGCCAGCTCAATGTCGCCTTCGGCGCGCAGACCGTGGTCCGCGACCTGAGCCTGGA TATCCGCCCCGGCGAATGCCTGGCCCTGGTGGGGGAATCCGGCTCGGGCAAGTCGGTGACTGCCCATTCGATCCTGCAAC TGCTGCCGCAGACCGGCTGCAGCGCCACCGGCAGCGTGCGCTATCGCGGCCAGGAACTGATCGGTGCCAGCCCGGCGACC CTGCAACAGCTGCGGGGCAACCGCATCGCGATGATTTTCCAGGAGCCCATGACCTCCCTCAACCCGCTGCACAGCGTGGA AAAACAGATCGGCGAAACCCTGCTGCTGCATCGCGGCCTGGGGGGCAAGGAGGCCCAGGCGCGGATCCTCGAACTGCTGG AGCTGGTGGGCATCCAGAAGCCCCGGGAGCGGCTCAAGGCCTACCCGCACCAGCTTTCCGGCGGCCAGCGCCAGCGGGTG ATGATCGCCATGGCCCTGGCCTGCGAACCGGAACTGCTGATTGCCGACGAACCCACCACCGCCCTGGACGTGACCGTGCA GCGCAAGATCCTGCTGCTGCTCAAATCCCTGCAACAGCGCCTGGGCATGTCCCTGCTGCTGATCAGCCACGACCTCAACC TGGTGCGGCGCATCGCCCAGCGGGTGTGCGTGATGAAAGCCGGGGAAATCGTCGAGCAGGCCGACTGCGACACCCTGTTC AACGCGCCAAGGCATCCCTACAGCTGCGAACTGTTGCACGCCGAACCCGAAGGCGAGCCGCTGTGCCGCGACAGCCGGGA AACCGTGCTGGAGGTGGACCACCTGCGCGTCGAATTCCAGATCGGCGGCGGCCTGTTCCGGCGCAAGGAGTACCTGCGGG CAGTGGACGGCATCAGCCTCAGCGTGCAGCAAGGCAAGACCCTGGGGATTGTCGGCGAATCCGGCTCGGGCAAATCCACC CTCGGCCAGGCAATCCTGCGGCTGCTGGATTCCCAGGGCGGCATCCGCTTCCAGGGCCAGGCCCTGGACGGCCTCAACCA GAAGCAACTGCGCCCCTGGCGCAAGCAGATGCAGGTGGTATTCCAGGACCCCTTCGGCAGCCTCAGTCCGCGCATGTCGG TGGCGCAGATCATCAGCGAAGGCCTGGAAGTGCACAGCCAGTACGATGCCCGCCAGTGCGACGAACAGGTCATCCGCGCC CTGGAGGAGGTCGGCCTCGACCCCGACAGCCGCCACCGCTACCCCCACGAGTTCTCCGGCGGCCAGCGCCAGCGCATCGC CATCGCCCGGGCCCTGGTGCTGAAACCGGCGCTGATCCTGCTGGACGAACCGACCTCGGCCCTGGACCGTACCGTACAGA AACAAGTGGTGGCCCTGCTGCGCCAACTGCAGGAAAAGTACGGCCTGACCTACCTGTTCATCAGCCATGACCTGGCGGTG GTGCGAGCCCTGGCCCACGACATGATCGTGATCAAGGACGGCAAGGTGGTTGAGCGCGGCGCCAGCCACGACGTATTCGA AGCCCCACAGCATCCCTACACCCAGGAACTGCTGGCTGCCGCCCATCCCGGCTGA Protein sequence : MTENLIEIRQLNVAFGAQTVVRDLSLDIRPGECLALVGESGSGKSVTAHSILQLLPQTGCSATGSVRYRGQELIGASPAT LQQLRGNRIAMIFQEPMTSLNPLHSVEKQIGETLLLHRGLGGKEAQARILELLELVGIQKPRERLKAYPHQLSGGQRQRV MIAMALACEPELLIADEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRRIAQRVCVMKAGEIVEQADCDTLF NAPRHPYSCELLHAEPEGEPLCRDSRETVLEVDHLRVEFQIGGGLFRRKEYLRAVDGISLSVQQGKTLGIVGESGSGKST LGQAILRLLDSQGGIRFQGQALDGLNQKQLRPWRKQMQVVFQDPFGSLSPRMSVAQIISEGLEVHSQYDARQCDEQVIRA LEEVGLDPDSRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQEKYGLTYLFISHDLAV VRALAHDMIVIKDGKVVERGASHDVFEAPQHPYTQELLAAAHPG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 2e-78 | 42 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 2e-78 | 42 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 2e-78 | 42 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 2e-78 | 42 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 3e-92 | 42 |
