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Name : pchD (PFL_3496) Accession : YP_260599.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : salicyl-AMP ligase Function : - COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism COG ID : COG1021 EC number : - Position : 4027168 - 4028835 bp Length : 1668 bp Strand : - Note : Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information.; identified by similarity to GB:AAD55799.1; similarity to GB:ABW70812.1; match to protein family HMM PF00501 DNA sequence : ATGTCCACTTTCGATGACCTCAAGGATTGCCCCTCTTGGCCCGAAGACTTCGCCCAGCGCTACCGCCAGGCCGGCTACTG GCGCGACGAAACCTTTGGCGACCTGCTGCGCAGCGCCGCCCAGGCCTTTGCCGAGCGTGAAGCACTGACCGAGGGCGAGC AGCACCTGAGCTACCGGCAACTGGACCTGCGGGTCGACCAACTGGCCGCCGGCTTATACCGGCTGGGTCTGCGGGCCGGC GACAACGTGGTGCTGCAACTGCCCAACAGTGCGGCCTTCGTCGAAGTCTGCTTTGCCCTTTACCGCCTCGGGGTGCGGCC GATCTTCGCGCTGCCGGCCCACCGGCACCTGGAAATCGGCCGCTTCTGCGAGTTCGCCCAGGCCCGGGCCTACTTCTGCG CCGACCGGGACGCCAGCTTCGACTATCGGGCCATGGCCCGCGACCTCAAGGACCGCAACCCGCAGCTGGAGTGGGTGGTA GTCGCCGGCGAGGCCGAGGAATTCACGGCCTTGCACAGCCTGTATGAGCCGGCGCCTGTGCGTACCTTCCAGTCCCCCAG CGCCGACGCGGTGGCCTGTTTCCAGCTCTCCGGCGGCTCCACCGGGGTGCCCAAGCTGATCCCACGCCGGCACCACGAAT ACCTCTACAACCTGCGGGCCAGTGCCGAGCGCTGTGGCCTGTCCGAGGCCAGCGTGTACCTGGTGGCGCTGCCCATGGCG CACAACTTTCCCATGTGCTGCCCAGGGTTCATCGGCACCTTTTCGGTGGGCGGGCGGGTGGTGCTGAGCCCCTCGCCGAG CCCGGAAGTCTGCTTCGAACTGATCGAGCGCCAGGGGGTGACCCACACCGCGCTGGTGCCGCCCCTGGCCCTGGTCTGGC TGGAAGCGGCCCAGGCCCGCGGGCGTGGCCTGGCGCCGTTGCAACTGCTGCAAGTGGGCGGCGCCAAACTCAGCTACGAG GCCGCAAGGCGCATCGAACCGGTGCTCGGCTGCCGCCTGCAGCAGGTGTTCGGCATGGCCGAGGGGCTGATCTGCTACAC CGACCCCGAGGACCCGCCACAGCGGGTGCTGCACACCCAGGGCCGGCCGCTGTCGCCGGCGGACGAAATTCGTGTGGTGG ACGAGCACGACCAGCCGGTGCCGGTGGGGCAGGTGGGGCAGTTGCTGACCCGCGGCCCTTACACCATCCGCGGTTACTAC CGTTACCCCGAGCACAACGCCCAGGCCTTCACGGCCGATGGTTTCTACCGCACCGGCGACCGGGTCATGCTCACTGCCGA CGGCTACCTGATGGTGGAAGGGCGCGACAAGGACCTGATCAACCGCGGGGGCGAAAAGATCGCTGCCGAAGAAGTGGAAA ACCTGCTGCTCAGCCACCCGTCGGTGGCCGACATCGCCCTGGTGGCGATGCCTGATGCCTTCCTGGGCGAACGCACCTGC GCCTTCGTCATCCCCCGCGGCACCGCGCCCCGGGCCCCGGAGCTGCTGCGTCACCTAAGGGCCCAGGGCCTGGCGGCGTT CAAGCTGCCGGACCGCTTCGAGTTCATCCCGGCCTTCCCCCAGACCGGGGTCGGCAAGGTCAGCCGCAAGCACCTGCGCG AGGCGATCCAGGCCCTGTACTTCGGCGCCCAGGCCGAACCCCTGGAGGGAAGTGACGCCCGTGGCTGA Protein sequence : MSTFDDLKDCPSWPEDFAQRYRQAGYWRDETFGDLLRSAAQAFAEREALTEGEQHLSYRQLDLRVDQLAAGLYRLGLRAG DNVVLQLPNSAAFVEVCFALYRLGVRPIFALPAHRHLEIGRFCEFAQARAYFCADRDASFDYRAMARDLKDRNPQLEWVV VAGEAEEFTALHSLYEPAPVRTFQSPSADAVACFQLSGGSTGVPKLIPRRHHEYLYNLRASAERCGLSEASVYLVALPMA HNFPMCCPGFIGTFSVGGRVVLSPSPSPEVCFELIERQGVTHTALVPPLALVWLEAAQARGRGLAPLQLLQVGGAKLSYE AARRIEPVLGCRLQQVFGMAEGLICYTDPEDPPQRVLHTQGRPLSPADEIRVVDEHDQPVPVGQVGQLLTRGPYTIRGYY RYPEHNAQAFTADGFYRTGDRVMLTADGYLMVEGRDKDLINRGGEKIAAEEVENLLLSHPSVADIALVAMPDAFLGERTC AFVIPRGTAPRAPELLRHLRAQGLAAFKLPDRFEFIPAFPQTGVGKVSRKHLREAIQALYFGAQAEPLEGSDARG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| irp5 | YP_001006819.1 | yersiniabactin siderophore biosynthetic protein | Virulence | HPI | Protein | 2e-109 | 50 |
| irp5 | CAA73130.1 | Irp5 protein | Virulence | HPI | Protein | 2e-109 | 50 |
| ybtE | NP_993003.1 | yersiniabactin siderophore biosynthetic protein | Virulence | HPI | Protein | 7e-108 | 50 |
| ybtE | YP_070120.1 | yersiniabactin siderophore biosynthetic protein | Virulence | HPI | Protein | 7e-108 | 50 |
| ybtE | CAA21394.1 | - | Virulence | HPI | Protein | 7e-108 | 50 |
| ybtE | AAA93464.1 | yersiniabactin 2,3-dihydoxybenzoate-AMP ligase | Virulence | HPI | Protein | 5e-108 | 50 |
| ybtE | YP_853079.1 | yersiniabactin siderophore biosynthetic protein | Virulence | PAI IV APEC-O1 | Protein | 8e-108 | 50 |
| irp5 | YP_002346898.1 | yersiniabactin siderophore biosynthetic protein | Virulence | HPI | Protein | 7e-108 | 50 |
| ybtE | NP_669710.1 | salicyl-AMP ligase | Virulence | HPI | Protein | 7e-108 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pchD | YP_260599.1 | salicyl-AMP ligase | VFG0168 | Protein | 1e-154 | 61 |
| pchD | YP_260599.1 | salicyl-AMP ligase | VFG0932 | Protein | 6e-108 | 46 |
| pchD | YP_260599.1 | salicyl-AMP ligase | VFG1817 | Protein | 2e-98 | 46 |
