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Name : PFL_3305 (PFL_3305) Accession : YP_260410.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 3814486 - 3816096 bp Length : 1611 bp Strand : + Note : identified by match to protein family HMM PF00005; match to protein family HMM PF08352 DNA sequence : ATGACCCAGGACAACCTGATCGAAGTCCGCGACCTGGCGGTGGAGTTCGTCACCGGCGAGCACCGCCAGCGGGTGGTGCA AGGCGTCAGCTTCGACATCAAGCGCGGCGAGACCCTGGCCCTGGTGGGCGAAAGCGGCTCGGGCAAATCGGTCACCGCCC ACTCCATCCTGCGGCTGCTGCCCTACCCTCTGGCGCACCACCCCAGCGGCACCATCCAGTATGCCGGGCACGACCTGCTG ACCCTGAAAGAGAAGACCATCCGCCATATCCGCGGCAACCGCATCGCGATGATCTTCCAGGAGCCCATGACCTCGCTGAA CCCGCTGCACAGCATCGAGAAGCAGATCAACGAAGTGCTGGGCATCCACAAGGGCCTGACCGGCAAGGTCGCCACCCGGC GCACCCTGGAACTGCTGGAGCTGGTGGGCATCCCCGAACCGCACAAGCGTCTCAAGGCCCTGCCCCACGAGCTGTCTGGC GGCCAGCGGCAACGGGTGATGATCGCCATGGCCCTGGCCAACGAGCCGGAACTACTGATCGCCGACGAGCCCACCACAGC CCTGGATGTCACCGTGCAGCTGAAGATCCTCGAGCTGCTCAAGGAACTGCAGGCGCGCCTGGGCATGGCGCTGCTGCTGA TCAGCCACGACCTGAACCTGGTGCGGCGCATTGCCCACCGGGTCTGTGTCATGCAGAAGGGCTGCATCGTCGAACAGGCA TCCTGCGAAGATCTGTTCCGCGCGCCGCAGCATCCCTACACCCGGGAACTGCTGGCCGCAGAACCCAGCGGCCTGCCGGC GGCCAACGAGATTGGCCCGCCGCTGCTGGAGGTTAACAACCTCAAGGTCTGGTTCCCGATCAAGAAAGGCCTGCTGCGCA GCACCGTGGATCACGTCAAGGCAGTGGACGGCATCCACTTCAGCCTGCCCCAGGGCCAGACCCTGGGCATCGTTGGGGAA AGCGGCTCGGGCAAGTCGACCCTGGGCCTGGCGATCCTGCGCCTGATTGCCAGCCAGGGCGGCATTCGCTTCGAGGGCCA GCAACTGGACAGCCTGACCCAGCAACAGGTTCGGCCGCTGCGGCGGGAAATGCAGGTGGTGTTCCAGGACCCTTTCGGCA GCCTCAGCCCGCGCATGAGCGTGAGCCAGATCGTCGGCGAGGGCCTGCGCATCCACAAGATAGGCAGTGAACAGGAGCAG GAGCAGGCCATCATCGAAGCCCTCAAGGAGGTCGGCCTGGACCCGGACACGCGGCACCGCTACCCCCATGAGTTCTCCGG CGGGCAGCGCCAGCGCATCGCCATCGCCCGGGCCCTGGTGCTCAAGCCGCGGCTGATCCTGCTGGACGAACCGACCTCGG CCCTGGACCGCACGGTGCAGCGCCAGGTGGTGGAACTGCTGCGCACACTGCAAAGCAAGTACAACCTGACCTACCTGTTC ATCAGCCACGACCTGGCGGTGGTCAAGGCCCTGAGCCACCAGTTGATGGTGATCAAGCACGGCCAGGTGGTGGAACAGGG GGACGCCGGGGGCATCTTCGACGCCCCGCAACACCCTTACACACGGCAACTGCTGGAAGCCGCCTTCCTGGCTCCGGCAA GCGCCGAATAA Protein sequence : MTQDNLIEVRDLAVEFVTGEHRQRVVQGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLAHHPSGTIQYAGHDLL TLKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHKGLTGKVATRRTLELLELVGIPEPHKRLKALPHELSG GQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELLKELQARLGMALLLISHDLNLVRRIAHRVCVMQKGCIVEQA SCEDLFRAPQHPYTRELLAAEPSGLPAANEIGPPLLEVNNLKVWFPIKKGLLRSTVDHVKAVDGIHFSLPQGQTLGIVGE SGSGKSTLGLAILRLIASQGGIRFEGQQLDSLTQQQVRPLRREMQVVFQDPFGSLSPRMSVSQIVGEGLRIHKIGSEQEQ EQAIIEALKEVGLDPDTRHRYPHEFSGGQRQRIAIARALVLKPRLILLDEPTSALDRTVQRQVVELLRTLQSKYNLTYLF ISHDLAVVKALSHQLMVIKHGQVVEQGDAGGIFDAPQHPYTRQLLEAAFLAPASAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 7e-77 | 44 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 7e-77 | 44 |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 7e-77 | 44 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 7e-77 | 44 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 3e-94 | 43 |
