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Name : PFL_3293 (PFL_3293) Accession : YP_260398.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : Orn/Lys/Arg decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : - Position : 3799912 - 3802167 bp Length : 2256 bp Strand : - Note : identified by similarity to SP:P28629; match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711 DNA sequence : ATGTATAAAGACCTGCAGTTTCCGATCCTGATCGTGCATCGCGACATCAAGGCCGATACGGTCGCGGGGGACCGGGTCAG GGGGATCGCCCGGGAACTGGAAAAGGACGGGTTCAGCATCTTTTCCGCGGTGGACTATGCCGAAGGGCGGCTGGTGGCTT CGACCCATCACGGCCTGGCCTGCATGTTGATCGCCGCCGAAGGGGCCGGGGAAAACAAGCACCTGTTGCAGAACATGGTG GAACTGATCCGCCTGGCGCGGGTACGTGCGCCGCTGCTGCCGATCTTTGCCCTGGGCGAGCAGGTGACCCTGGAAAACGC CCCCGCCGACGCCATGAGCGAACTCAACCAGCTGCGGGGCATTCTCTACCTGTTCGAGGACACGGTGCCGTTCCTGGCCC GGCAAGTGGCCCGGGCCGCGCGGGGCTACCTGGATGGCTTGCTGCCACCGTTCTTCAAGGCCCTGGTACAGCACACCGCC GACTCCAACTATTCCTGGCACACCCCGGGGCACGGCGGTGGCGTGGCCTATCGCAAGAGCCCGGTGGGGCAGGCGTTTCA CCAGTTCTTTGGCGAGAACACCTTGCGTTCGGACCTGTCGGTGTCAGTCCCTGAGCTGGGGTCGCTGCTGGATCACACCG GCCCGCTGGCGGAAGCCGAGGCCCGTGCCGCGCGCAACTTTGGCGCCGATCACACCTTTTTCGTGATCAATGGCACCTCC ACCGCCAACAAGATCGTCTGGCATTCCATGGTCGGTCGCGATGACCTGGTGCTGGTGGACCGCAACTGCCACAAGTCGGT GCTGCACTCGATCATCATGACCGGGGCCATTCCCCTGTACCTGTGCCCGGAGCGCAACGAACTGGGGATCATCGGGCCGA TTCCCCTGAGCGAGTTCAGCGCCGAGTCGATCCAGGCCAAGATCGATGCCAGCCCGCTGACCCGCGGCCGGCCGCCCAGG GTCAAGCTGGCGGTGGTCACCAACTCCACTTATGACGGCCTGTGCTACAACGCCGAGCTGATCAAGCAGAGCCTGGGCAA CAGTGTCGAGGTGCTGCACTTCGACGAAGCCTGGTACGCCTATGCGGCCTTTCATGAGTTCTTCGCCGGGCGCTACGGCA TGGGCACGTCCCGCAGCGACGACAGCCCGCTGGTGTTCTCCACCCATTCCACCCACAAGCTGCTGGCGGCCTTCAGCCAG GCCTCGATGATTCACGTGCAGGATGGCGGCGCCCGGCAACTGGACCGCGACCGCTTCAACGAAGCCTTCATGATGCATAT CTCCACCTCGCCGCAGTACAGCATCATCGCCTCGCTGGACGTGGCTTCGGCGATGATGGAAGGGCCGGCCGGGCGCTCGC TGCTGCAGGAAATGTTCGACGAGGCCCTGAGCTTTCGCCGGGCCCTGGCCAACCTGCGGCAGAACATCGCCGCCGATGAC TGGTGGTTCTCGGTGTGGCAACCGGAGCGGGTCGAGGGCATCGACCAGGTGCGCACCGAGGACTGGCTGCTGGAACCTGA GGGCGAGTGGCACGGTTTTGCCGGGGTCACCGATGACTATGTGCTGCTGGACCCGATCAAGGTGACCCTGGTCATGCCCG GCCTGACCGCGGGCGGCGCCCTGAGCGAGCACGGGATCCCGGCGGCGGTGGTCAGCAAGTTTCTCTGGGAGCGCGGGCTG GTGGTGGAAAAGACCGGGCTCTATTCGTTCCTGGTGCTGTTCTCCATGGGCATCACCAAGGGCAAGTGGAGCACGCTGCT CACCGAACTGCTGGAGTTTAAGCGCAACTACGACGCCAATGTCAGCCTGGCCAGCTGCCTGCCCAGCGTGGCCGGGCAGG ACCCGCAGCGCTACCAGGGCATGGGCCTGCAGGACCTGTGCGACCAGTTGCACGCCTGCTACCGCAGCAACGCCACGGCC AAGCACCTCAAGCGCATGTACACGGTGCTGCCGGAGGTGGCCATGAAGCCTGCCGATGCCTATGACCATCTGGTGCGGGG CGAGGTCGAGGCGGTTTCCATCGATCAGTTGCAGGGGCGTATCGCTGCGGTGATGCTGGTGCCCTATCCGCCGGGCATTC CGCTGATCATGCCGGGCGAGCGTTTCACCGATTCCACCCGTTCGATCATCGATTACCTGGCCTTCGCCCGGGCCTTTGAC AGCAGCTTCCCGGGGTTTGTCGCCGATGTGCACGGGCTGCAGCATGACGATCTGGGCGACGGGCGCCAGTACACCGTCGA TTGCATCAAGGCATGA Protein sequence : MYKDLQFPILIVHRDIKADTVAGDRVRGIARELEKDGFSIFSAVDYAEGRLVASTHHGLACMLIAAEGAGENKHLLQNMV ELIRLARVRAPLLPIFALGEQVTLENAPADAMSELNQLRGILYLFEDTVPFLARQVARAARGYLDGLLPPFFKALVQHTA DSNYSWHTPGHGGGVAYRKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHTFFVINGTS TANKIVWHSMVGRDDLVLVDRNCHKSVLHSIIMTGAIPLYLCPERNELGIIGPIPLSEFSAESIQAKIDASPLTRGRPPR VKLAVVTNSTYDGLCYNAELIKQSLGNSVEVLHFDEAWYAYAAFHEFFAGRYGMGTSRSDDSPLVFSTHSTHKLLAAFSQ ASMIHVQDGGARQLDRDRFNEAFMMHISTSPQYSIIASLDVASAMMEGPAGRSLLQEMFDEALSFRRALANLRQNIAADD WWFSVWQPERVEGIDQVRTEDWLLEPEGEWHGFAGVTDDYVLLDPIKVTLVMPGLTAGGALSEHGIPAAVVSKFLWERGL VVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRNYDANVSLASCLPSVAGQDPQRYQGMGLQDLCDQLHACYRSNATA KHLKRMYTVLPEVAMKPADAYDHLVRGEVEAVSIDQLQGRIAAVMLVPYPPGIPLIMPGERFTDSTRSIIDYLAFARAFD SSFPGFVADVHGLQHDDLGDGRQYTVDCIKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 3e-131 | 44 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 9e-130 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PFL_3293 | YP_260398.1 | Orn/Lys/Arg decarboxylase | VFG1670 | Protein | 2e-131 | 44 |
