Gene Information

Name : PFL_3147 (PFL_3147)
Accession : YP_260253.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3621649 - 3622323 bp
Length : 675 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387

DNA sequence : 
ATGCGCATTCTGGTGATTGAGGACGAACCCAAGACGGCCGACTACCTGCATCAGGGCCTGAGTGAAAGTGGCTATGTGGT
GGACCGGGCGAACAATGGCGTGGACGGCCTGCACCTGATTCAACAACAGCCCTATGAATTGGTAATCCTGGATATCAACC
TGCCCGGCAAAGATGGTTGGCAAGTTCTTGAACAACTGCAGGGAAACTATCCCGCACGGGTCATGATGTTGACTGCCCGC
GGGCGCCTGGAAGACAAGGTCAAGGGCCTGGATATGGGCGCCGATGATTATCTGGTCAAACCGTTTCAATTTCCCGAGTT
GCTGGCCCGGGTTCGTACCCTGATGCGTCGTAGTGAAGTCATTGTCCAACCGGAAGTTCTGCAAGTTGCCGACCTGCAAC
TTGACCCGCGCCGTCATCGGGCTTATCGCGGCAGTCGGCGTATCGACCTGACGACCAAGGAGTTCACCCTGCTGCATGTA
TTGATGCGCCACAGCGGAGAAGTACTGACCCGCACCCAGATCATTTCCCTGGTCTGGGACATGAACTTCGACTGCGACAC
CAATGTGGTGGAAGTCTCCATCAGCCGCTTGCGGGGCAAGATCGACGACGCCAGTGACGTCAAGCTGATCCATACCCTGC
GCGGTGTCGGTTATGTCCTGGAAGCACGCCCATGA

Protein sequence : 
MRILVIEDEPKTADYLHQGLSESGYVVDRANNGVDGLHLIQQQPYELVILDINLPGKDGWQVLEQLQGNYPARVMMLTAR
GRLEDKVKGLDMGADDYLVKPFQFPELLARVRTLMRRSEVIVQPEVLQVADLQLDPRRHRAYRGSRRIDLTTKEFTLLHV
LMRHSGEVLTRTQIISLVWDMNFDCDTNVVEVSISRLRGKIDDASDVKLIHTLRGVGYVLEARP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-52 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-52 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_3147 YP_260253.1 DNA-binding heavy metal response regulator BAC0125 Protein 1e-61 57
PFL_3147 YP_260253.1 DNA-binding heavy metal response regulator BAC0083 Protein 4e-61 57
PFL_3147 YP_260253.1 DNA-binding heavy metal response regulator BAC0197 Protein 3e-63 56
PFL_3147 YP_260253.1 DNA-binding heavy metal response regulator BAC0638 Protein 1e-54 55
PFL_3147 YP_260253.1 DNA-binding heavy metal response regulator BAC0111 Protein 1e-59 54
PFL_3147 YP_260253.1 DNA-binding heavy metal response regulator BAC0308 Protein 9e-55 53
PFL_3147 YP_260253.1 DNA-binding heavy metal response regulator BAC0347 Protein 3e-54 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_3147 YP_260253.1 DNA-binding heavy metal response regulator VFG0596 Protein 4e-53 52
PFL_3147 YP_260253.1 DNA-binding heavy metal response regulator VFG1390 Protein 2e-40 43
PFL_3147 YP_260253.1 DNA-binding heavy metal response regulator VFG1389 Protein 3e-36 43