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Name : lspL (PFL_3079) Accession : YP_260185.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : UDP-glucuronate 5'-epimerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0451 EC number : 5.1.3.12 Position : 3549830 - 3550849 bp Length : 1020 bp Strand : + Note : identified by similarity to SP:O54067; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 DNA sequence : ATGAATATCCTGATCACCGGGGCCGCCGGATTCATCGGCGCCCATACCGCACTGCGTTTGCTCAAGGATGGGCACCAGGT CACCGGGCTGGATAATTTCAACGACTACTACGACCCCCAGCTCAAGCGCGACCGGGTGCGCTGGGTGGAACGCCAGGTAG GGCACTTTCCCCTGCAGCGCCTGGACCTGGCCGACAGCGAGGGCCTGGAACGGCTGTTCGCCGAAGTACGGCCCCAGGTG GTGATCAACCTCGCCGCCCAGGCCGGGGTGCGCTATTCCCTGGAAAACCCCAAGGCCTACCTGGACAGCAACCTCAGCGG TTTCCTCAACCTGCTGGAGATGTGCCGGCGCTACCCGGTGCAGCACCTGATCTACGCCTCGTCCAGTTCGGTGTACGGGG CCAACCAGCAGACCCCGTACAAGGTCAGTGACAACGTCGACCACCCGCTGTCGCTGTATGCGGCCAGCAAGAAAGCCAAC GAGCTGATGGCCCACAGCTACAGCCACCTGTTCGGCGTGCCCGCCACCGGCCTGCGCTTCTTCACGGTGTACGGCCCCTG GGGTCGGCCAGACATGTCGCCGATCCTGTTCGCCGACGCCATCAGCCAGGGCCGGCCGCTGAAGCTGTTCAACTACGGCA TGCACCAGCGCGACTTCACCTACATCGACGACATCGTCGAATCCCTGGTGCGCCTGCTGGGCAAACCGCCGGTGCGCGAT CCGCTGTGGGACCGGGAACAGCCGGACCCGTCCACCAGCATGGCGCCCTGGCGCCTGTTCAACATCGGCGGCCAGCGCCC GGTGGAGCTCAAGGACTACGTGGCGACCCTGGAAAAACTCCTCGGCCACAAGGCCCAGGTGGAATACCTGCCGCTGCAGC CCGGCGATGTGCTCAACACCTGCGCGGATGTCAGCGCCCTGGAAAACCTCACCGGTTTCGGCCCCCAGGTGCCCCTGGAG GAAGGCCTGCGCGAGTTCGTCCAGTGGTACCTGAGCTACTACCCGGGCGCGGCGTCCTGA Protein sequence : MNILITGAAGFIGAHTALRLLKDGHQVTGLDNFNDYYDPQLKRDRVRWVERQVGHFPLQRLDLADSEGLERLFAEVRPQV VINLAAQAGVRYSLENPKAYLDSNLSGFLNLLEMCRRYPVQHLIYASSSSVYGANQQTPYKVSDNVDHPLSLYAASKKAN ELMAHSYSHLFGVPATGLRFFTVYGPWGRPDMSPILFADAISQGRPLKLFNYGMHQRDFTYIDDIVESLVRLLGKPPVRD PLWDREQPDPSTSMAPWRLFNIGGQRPVELKDYVATLEKLLGHKAQVEYLPLQPGDVLNTCADVSALENLTGFGPQVPLE EGLREFVQWYLSYYPGAAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1I | AAA64648.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-92 | 53 |
